Query= MSMg01no143_i14.b1 MSMg01no143_i14.b1 CHROMAT_FILE:
MSMg01no143_i14.b1 PHD_FILE: MSMg01no143_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:07 2005
(193 letters)
>mm_chr11_39136935_39137527
Length = 593
Score = 360 bits (186), Expect = e-104
Identities = 189/190 (99%)
Strand = Plus / Plus
Query: 1 ttatcttgaattaaaacaacttgaaatgttcacagtcccacctttaatcaagtggaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatcttgaattaaaacaacttgaaatgttcacagtcccacctttaatcaagtggaacca 260
Query: 61 taaactacaaagaattgaaaatgaaatgagtataagaaatttcacactccaagcagttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaactacaaagaattgaaaatgaaatgagtataagaaatttcacactccaagcagttgg 320
Query: 121 atgattataagtttccacctgttaacatattaataacagtgttaaagagcacattgtgcc 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgataataagtttccacctgttaacatattaataacagtgttaaagagcacattgtgcc 380
Query: 181 tgaggtatta 190
||||||||||
Sbjct: 381 tgaggtatta 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space: 108225
Effective search space used: 108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no143_i14.g1 MSMg01no143_i14.g1 CHROMAT_FILE:
MSMg01no143_i14.g1 PHD_FILE: MSMg01no143_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:07 2005
(609 letters)
>mm_chr11_39275682_39276691
Length = 1010
Score = 1044 bits (540), Expect = 0.0
Identities = 576/588 (97%), Gaps = 3/588 (0%)
Strand = Plus / Minus
Query: 23 cctggatcataagtcatggaggcattaatggctcttttagactcatgctcagccagcttt 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 cctggatcataagtcatggaggcattaatggctcttttagactcatgctcagccagcttt 951
Query: 83 cttatacacttcaggaatcatgcccatgg-atttgtgttacctccattggactggaccct 141
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 950 cttatacacttcaggaatcatgccca-ggcatttgtgttacctccattggactggaccct 892
Query: 142 tttctatcaattaataatcaaaacatttcctcattgccatgaccacaatgcaacctgata 201
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 891 tttctatcaattaataatcaaaacagttcctcattgccatgaccacaatgcaacctgata 832
Query: 202 aagagagcttatcaactgagatgatgatgatgattatcatagtgatttcaagctgactgt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 aagagagcttatcaactgagatgatgatgatgattatcatagtgatttcaagctgactgt 772
Query: 262 taatattatttagtactttacctgaaaaatagaggtagatagcaccttaagaacgacaac 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 taatattatttagtactttacctgaaaaatagaggtagatagcaccttaagaacgacaac 712
Query: 322 tgatgttatcattggcttctacacccaaacataaaatgtgcatgtggtctttaacacaaa 381
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 711 tgatgttatcattggcttctagatgcaaacctaaaatgtgcatgtggtctttaacacaaa 652
Query: 382 gttgtacatatatacacataaatttccatataaagcaaaatttagaggaaaagcaaaagt 441
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 651 gttgtacatatataaacataaatttccagataaagcaaaatttagaggaaaagcaaaagt 592
Query: 442 atatcatatatagaggataagaagctataatgtaaatattatgcagttttttt-agggat 500
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 591 atatcatatatagatgataagaagctataatgtaaatattattcagttttttttagggat 532
Query: 501 agaaactgtatttatgcagaaataataatgtaagccaaatactttctgagtttttgaagg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agaaactgtatttatgcagaaataataatgtaagccaaatactttctgagtttttgaagg 472
Query: 561 atcaagtgcaagtgttttggacatttacattccactgttattattgac 608
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atcaagtgcaagtgttttggacatttacattccactgttattattgac 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
