Query= MSMg01no144_f11.b1 MSMg01no144_f11.b1 CHROMAT_FILE:
MSMg01no144_f11.b1 PHD_FILE: MSMg01no144_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:09 2005
(483 letters)
>mm_chr11_112436498_112437381
Length = 884
Score = 851 bits (440), Expect = 0.0
Identities = 473/484 (97%), Gaps = 1/484 (0%)
Strand = Plus / Minus
Query: 1 gtttcctgtcggggctgaacattcattccaaaggagaacgtagctcagaatagggcttgg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtttcctgtcggggttgaacattcattccaaaggagaacgtagctcagaatagggcttgg 625
Query: 61 ttctaatattgacttaacctggtaaagttcggattgggggaagaaaaggacaccccaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctaatattgacttaacctggtaaagttcggattgggggaagaaaaggacaccccaaca 565
Query: 121 ctaacaccatgttcaatggtgtggctaatgatgtcccagacctggagtgttaacatttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctaacaccatgttcaatggtgtggctaatgatgtcccagacctggagtgttaacatttct 505
Query: 181 ctgttcagctttcttatcttcaagagtctgtggtctcactttttaatttatcatctttca 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgctcagctttcttatcttcaagagtctgtggtctcactttttaatttatcatctttca 445
Query: 241 tacccaatgtctaaatctcttgccacccattttcagtatccttggttgtgtagtactgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 cacccaatgtctaaatctcttgccacccattttcagtatccttggttgtgtagtacagtg 385
Query: 301 agaaaaacattacctgaatgggtagttctggg-aactggatgcctggcccaccgctgaag 359
|||||||||||||||||||||||||||||||| |||||||||||||| || | |||||
Sbjct: 384 agaaaaacattacctgaatgggtagttctgggaaactggatgcctggggtacagttgaag 325
Query: 360 gaactgtgcactaaagagttggtcatccctactactcctggttggccaaaggtgggtgtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaactgtgcactaaagagttggtcatccctactactcctggttggccaaaggtgggtgtt 265
Query: 420 ctacacctgagcaaaccaccatccagagtcttaaaagaaagagtatcacttaacccatgc 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 ctacacctgagcaaaccaccatccagtgtcttaaaagaaagagtatcacttaacccatgc 205
Query: 480 tttc 483
||||
Sbjct: 204 tttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space: 413402
Effective search space used: 413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_f11.g1 MSMg01no144_f11.g1 CHROMAT_FILE:
MSMg01no144_f11.g1 PHD_FILE: MSMg01no144_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:09 2005
(341 letters)
>mm_chr11_112333034_112333774
Length = 741
Score = 648 bits (335), Expect = 0.0
Identities = 338/339 (99%)
Strand = Plus / Plus
Query: 1 ctaacacccatacaaaagccaggcacaatggtgtgtctgtaacctcaattctaggggtcg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaacacctatacaaaagccaggcacaatggtgtgtctgtaacctcaattctaggggtcg 260
Query: 61 gagacacatggattttgggagggcttgctggccagctggctttgcaaaatcaatgtgctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagacacatggattttgggagggcttgctggccagctggctttgcaaaatcaatgtgctc 320
Query: 121 taggttcagtggggaaccacatctcaaaaagtaaagtggagagagctacgttgtacctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggttcagtggggaaccacatctcaaaaagtaaagtggagagagctacgttgtacctat 380
Query: 181 tatcaacctctgttctccacataggctgtgcttcatggcacgtgcatatgcaccatgtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcaacctctgttctccacataggctgtgcttcatggcacgtgcatatgcaccatgtac 440
Query: 241 tgatgtgtacactggtgcatacatctttcaacacgggccaagcttattcgtgatatcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgtgtacactggtgcatacatctttcaacacgggccaagcttattcgtgatatcatt 500
Query: 301 ttacaatatgtgaatatattttgtgttctgggatgagtg 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacaatatgtgaatatattttgtgttctgggatgagtg 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
