BAC Information

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BAC

Clone NameMSMg01-144G15
Chromosome11 (Build37)
Map Location 88,276,816 - 88,277,367
singlet/doubletsinglet
Overlap geneMsi2
Upstream geneTex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144G15.T7 (MSMg01no144_g15.b1)MSMg01-144G15.TJ (MSMg01no144_g15.g1)
ACCAG348491AG348492
length699798
length of high quality
(start - end)
557 (46 - 602)77 (76 - 152)
definitionCHROMAT_FILE: MSMg01no144_g15.b1 PHD_FILE: MSMg01no144_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:14 2005CHROMAT_FILE: MSMg01no144_g15.g1 PHD_FILE: MSMg01no144_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGG
AATTCATTAAATCACCCTCTTAGAATGTAAGTAGCCTGCTATCCACCAGC
TAGCTCTCTGTACAGATGGCCCACACCCCATCATGGATACCCTCTGTGGA
TAAGTAAGGATCACTCGGTGCACCATGCAACCAAACCAGCTCTGTAACGT
TTCAATAGTCCTCTAGTCAGCCGCCATAGCTTTTTTGATGACAGGAGATA
GGCTTTGAACAGGGTAAGGCACAGAAGTAGGGATGACTGCAGCTATAAAA
GACACATGTTCCAAATGATAAATATGGCAGCTGTCAAAAGGCTTTGTACC
CGTCAATCTCTCTGTCTGTCCATCCCATTCATCTATCTATCCATGTACCC
ACCCACTCACCTCTCCACCCACCCACCTCCCCAGCCAATCACCCACCCAC
GCATCCATCCACTTACCCATTCATCTACCCACCCACCTATCCATCCATCC
ACCTGCCCACTCATCCGTCTATCCATTCTTCCAGCCACCCATCCATCTAC
CCACTCATCCATCCACCCATCCATCCATCTTCTCTGTCCAGTTCTACAGC
ACAGTATCTGCGCGATCTTCATCTCCGGTGTATATGACCTTGTTCTATGG
AAACTCTTACCGGCCAAAGATCTCCCTTCCTGGTCCCTGACACACTATG
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGCTTCCCTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTCATTTATTTATTTATTTATTTATTTATG
TTGGCCCGGCTGGCTTAGATCCCCCTCTCCTGCGCCGCTCCTTCGTTTCT
TATTGTATGTGCCTGCCGGACTACTGGTCCCTCGAAGTAGAGGTGTCATA
TTCTGCGTGCTGACTGCTCCCGTCCGCCCCTCGTCGGCCGCCGGTTCTTA
TCCCCGTGTCTGCGTCGTGTTTGTTTTTTCGAGCCCCCCCCCCCGCCCCT
GTGTTCCTCCTTCCCCCCGCCCCCCCTTTCTGCCCTCTTCCCTTTCCCCT
TGTTCCCTTGTTTTCCCGCGCCCCCCCCCCCCGCCATATTTCCGCTCCCT
TCTATCTCCTTCCCGCCGCCCCCGCCCTGCCCCTTCTTTTTTGTTCCTCG
CCCCTCTTGTCCTCCCCTTCTCCCCTCGTTCCCCCCCCCCGCCCTTCTCT
CCTCGCCTTTTTTTCTCCCCCCCTTTTTTCCGTCCCCCCCCCTTCCCCCC
TTCGTTTACCATTCCCTTTTCTTTCCCTCGCTTTCCCGCCTTTCGCCCCC
CCTGTTTTCTCTCCTCGTTTCCCCCCTTCACTCCCGGTCCTCCCTCTCGT
GGATGCCCGTTTCCTGTCCCCTTTTTTCCGCCCCCCTTTTCCTCCTATCT
CTTCCCTGCGTTCCGCGCCCTCCCCTCTCTTTCCTCCCGCCGTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_g15.b1 MSMg01no144_g15.b1 CHROMAT_FILE:
MSMg01no144_g15.b1 PHD_FILE: MSMg01no144_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:14 2005
         (557 letters)



>mm_chr11_88276612_88277568
          Length = 957

 Score = 1044 bits (540), Expect = 0.0
 Identities = 549/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaaatcaccctcttagaatgtaagtagcctgctatccaccagctagctctct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaatcactctcttagaatgtaagtagcctgctatccaccagctagctctct 264

                                                                       
Query: 65  gtacagatggcccacaccccatcatggataccctctgtggataagtaaggatcactcggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtacagatggcccacaccccatcatggataccctctgtggataagtaaggatcactcggt 324

                                                                       
Query: 125 gcaccatgcaaccaaaccagctctgtaacgtttcaatagtcctctagtcagccgccatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaccatgcaaccaaaccagctctgtaacgtttcaatagtcctctagtcagccgccatag 384

                                                                       
Query: 185 cttttttgatgacaggagataggctttgaacagggtaaggcacagaagtagggatgactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttttttgatgacaggagataggctttgaacagggtaaggcacagaagtagggatgactg 444

                                                                       
Query: 245 cagctataaaagacacatgttccaaatgataaatatggcagctgtcaaaaggctttgtac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagctataaaagacacatgttccaaatgataaatatggcagctgtcaaaaggctttgtac 504

                                                                       
Query: 305 ccgtcaatctctctgtctgtccatcccattcatctatctatccatgtacccacccactca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccgtcaatctctctgtctgtccatcccattcatctatctatccatgtacccacccactca 564

                                                                       
Query: 365 cctctccacccacccacctccccagccaatcacccacccacgcatccatccacttaccca 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctctccatccacccacctccccagccaatcacccacccacgcatccatccacttaccca 624

                                                                       
Query: 425 ttcatctacccacccacctatccatccatccacctgcccactcatccgtctatccattct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcatctacccacccacctatccatccatccacctgcccactcatccgtctatccattct 684

                                                                       
Query: 485 tccagccacccatccatctacccactcatccatccacccatccatccatcttctctgtcc 544
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 tccagccacccatccatctacccactcatccatccacccacccatccatcttctctgtcc 744

                       
Query: 545 agttctacagca 556
           ||||||||||||
Sbjct: 745 agttctacagca 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)