BAC Information

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BAC

Clone NameMSMg01-144H07
Chromosome11 (Build37)
Map Location 116,851,396 - 117,010,736
singlet/doubletdoublet
Overlap geneLOC100042036, Sec14l1
Upstream geneItgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
Downstream geneSept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144H07.T7 (MSMg01no144_h07.b1)MSMg01-144H07.TJ (MSMg01no144_h07.g1)
ACCAG348523AG348524
length717713
length of high quality
(start - end)
577 (48 - 624)415 (70 - 484)
definitionCHROMAT_FILE: MSMg01no144_h07.b1 PHD_FILE: MSMg01no144_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:17 2005CHROMAT_FILE: MSMg01no144_h07.g1 PHD_FILE: MSMg01no144_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,010,161 - 117,010,736)(116,851,396 - 116,851,810)
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAAATGGGCGG
AATTCACTTGCATTTCGGCTCCCAGGGCCATGCAGAATGGTAGGTACATC
AGGCTGACAACCCAGCCATTGACCTCAGCACTTGCTTTTTAACCTTCTAG
AACGTGTGGTAAACGGTACCATCAGGCTGTGGGGCCAAGAGCAACGGAAG
GAAGTTGATTTAGCTCCTGTTCTTTACATGCTGGAGAGAGCCAAGGCCAC
CCACCTGATTGGCCGGCCGAAGACCTTGGTGTTTTCCTCGCATCGTCTCA
GGCCTTCTTCGTTTATGGAAAGAACCTGTAAGCAAAGGCCGTGACGGCAA
GGGTCAGTCCCAGAAGGCAAAGGTGACATCAGACTCCACAGAGGGGAATT
AAGGCAAGATGACAGGTGCACGTGGGACCTCAAGCACTGTCCTCACACCC
CACACGGCAACAACAAACATTTCCCTTGCAGAGAATAGACAGGAGCAGCC
ACAGCAGACAAAGCAGGTGGCCCTAAGAAAGTGGCAGTTCAAGTCACCTG
GGCACTGATTGATATGGGGGTGTTTGCAGAACAGGCTCGTTTGGGATAGT
AGGAGGGGGAGAGAGAGAGTCTGAGCATGCTCGAGTGCATGTATATGTGT
GTGTGCTCGTGCGGCGTTTAATCGTGCTTGTGCGTGTGTTGAGCGCGTGC
GCTTCTTTTTGTTGCTT
CTCGATGCAGTGGGAGGCCTGGCGGCCGCCTGGTTCCTAAATATGAGGTG
ACCTATAGAAGTTTCGCGGAATTCTCGAGGCGTGTCTAAACTCCAGAGAC
CCTGAAATTTCCATTTCATTTTAATAGTACCAAACTGGAGCCATGCTAGG
GTGTGGTAGCCTTTCCCGTAATCCCAGCACAGAGCAAACAGAGGCAGGAA
GATCGGGAGTTCAGGGTTATCCTCAGCTACACAGCAAGTCGGAAGCCAGC
CTGGGCTACGTGAGGATCTGCAAAAGCCCAAAATCAACGCAGCCCAGAGG
GAACGGAGTCAGCTTTAATTCTGGAAACTTCCAAACAGCTGTCTTGGCCT
TGGAAGTGCTGTTTCTGTCTGCCCATTCATTCATCCATTCATCAATTAAA
AAGCAATTTCTGAGCACATAGCCCAGCTGGCCCTGTGTTGAAGCTGGAAA
AAAGCTCTCAGTCCCTCAACTCCCGGAGCAGAGCCGGGATGGGGGTGGGG
GATGACCGTATTCAGTCATGATGAAAGCATTAATTTCCTGTTTTAATTAT
TCCGTAGAAACTATTGATAATATTCGAGGGATCTCTGAGATGGTGTGAAT
AGTCCGATGGGGAGCAAGAATGATCTGATAGCCCGGTCCAGCCCCTCCTC
TGGTCCGTGAGCATGGGTTGTTTCCAGCGAAGTTTTGGCACTGTTTCCAG
CCTCTCCCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_h07.b1 MSMg01no144_h07.b1 CHROMAT_FILE:
MSMg01no144_h07.b1 PHD_FILE: MSMg01no144_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:17 2005
         (577 letters)



>mm_chr11_117009960_117010936
          Length = 977

 Score = 1069 bits (553), Expect = 0.0
 Identities = 571/577 (98%), Gaps = 2/577 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcacttgca-tttcggctcccagggccatgcagaatggtaggtacatcaggctga 60
           |||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 777 ggaattcacttgcagtct-ggctcccagggccatgcagactggtaggtacatcaggctga 719

                                                                       
Query: 61  caacccagccattgacctcagcacttgctttttaaccttctagaacgtgtggtaaacggt 120
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 caaccctgccattgaccgcagcacttgctttttaaccttctagaacgtgtggtaaacggt 659

                                                                       
Query: 121 accatcaggctgtggggccaagagcaacggaaggaagttgatttagctcctgttctttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 accatcaggctgtggggccaagagcaacggaaggaagttgatttagctcctgttctttac 599

                                                                       
Query: 181 atgctggagagagccaaggccacccacctgattggccggccgaagaccttggtgttttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atgctggagagagccaaggccacccacctgattggccggccgaagaccttggtgttttcc 539

                                                                       
Query: 241 tcgcatcgtctcaggccttcttcgtttatggaaagaacctgtaagcaaaggccgtgacgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcgcatcgtctcaggccttcttcgtttatggaaagaacctgtaagcaaaggccgtgacgg 479

                                                                       
Query: 301 caagggtcagtcccagaaggcaaaggtgacatcagactccacagaggggaattaaggcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caagggtcagtcccagaaggcaaaggtgacatcagactccacagaggggaattaaggcaa 419

                                                                       
Query: 361 gatgacaggtgcacgtgggacctcaagcactgtcctcacaccccacacggcaacaacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gatgacaggtgcacgtgggacctcaagcactgtcctcacaccccacacggcaacaacaaa 359

                                                                       
Query: 421 catttcccttgcagagaatagacaggagcagccacagcagacaaagcaggtggccctaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catttcccttgcagagaatagacaggagcagccacagcagacaaagcaggtggccctaag 299

                                                                       
Query: 481 aaagtggcagttcaagtcacctgggcactgattgatatgggggtgtttgcagaacaggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aaagtggcagttcaagtcacctgggcactgattgatatgggggtgtttgcagaacaggct 239

                                                
Query: 541 cgtttgggatagtaggagggggagagagagagtctga 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 238 cgtttgggatagtaggagggggagagagagagtctga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no144_h07.g1 MSMg01no144_h07.g1 CHROMAT_FILE:
MSMg01no144_h07.g1 PHD_FILE: MSMg01no144_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:18 2005
         (415 letters)



>mm_chr11_116851196_116852010
          Length = 815

 Score =  772 bits (399), Expect = 0.0
 Identities = 411/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctcgaggcgtgtctaaactccagagaccctgaaatttccatttcattttaatagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctcgaggcgtgtctaaactccagagaccctgaaatttccatttcattttaatagta 260

                                                                       
Query: 61  ccaaactggagccatgctagggtgtggtagcctttcccgtaatcccagcacagagcaaac 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ccaaactggagccatgctagggtgtggtagccttgcccgtaatcccagcacagagcaaac 320

                                                                       
Query: 121 agaggcaggaagatcgggagttcagggttatcctcagctacacagcaagtcggaagccag 180
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 agaggcaggaagatccggagttcagggttattctcagctacacagcaagtcggaagccag 380

                                                                       
Query: 181 cctgggctacgtgaggatctgcaaaagcccaaaatcaacgcagcccagagggaacggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgggctacgtgaggatctgcaaaagcccaaaatcaacgcagcccagagggaacggagt 440

                                                                       
Query: 241 cagctttaattctggaaacttccaaacagctgtcttggccttggaagtgctgtttctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagctttaattctggaaacttccaaacagctgtcttggccttggaagtgctgtttctgtc 500

                                                                       
Query: 301 tgcccattcattcatccattcatcaattaaaaagcaatttctgagcacatagcccagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcccattcattcatccattcatcaattaaaaagcaatttctgagcacatagcccagctg 560

                                                                  
Query: 361 gccctgtgttgaagctggaaaaaagctctcagtccctcaactcccggagcagagc 415
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 gccctgtgttgaagctggaaaagagctctcagtccctcaactcccggagcagagc 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)