BAC Information

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BAC

Clone NameMSMg01-144L19
Chromosome11 (Build37)
Map Location 60,068,255 - 60,068,743
singlet/doubletsinglet
Overlap geneTom1l2
Upstream geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1
Downstream geneLOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144L19.T7 (MSMg01no144_l19.b1)MSMg01-144L19.TJ (MSMg01no144_l19.g1)
ACCAG348727AG348728
length728731
length of high quality
(start - end)
492 (48 - 539)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no144_l19.b1 PHD_FILE: MSMg01no144_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:38 2005CHROMAT_FILE: MSMg01no144_l19.g1 PHD_FILE: MSMg01no144_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCG
GAATTCAGTCCTGATTATCAGTCCTGTTGCAGCAGCAAAGGGGACGGGGA
GGAGGGAAGGTCCACTGAAAGAGAGAAGGGAGAGCATGAGGTGTGGGATA
CGCTAGATTTTTCCTGGGAAGAATATCTTGGCCACTCTCTTTGTTGAAAT
GAGATGCACAAAGTGAGCAGGGATGGCCACAAGGTACTCAAAAAACAGCA
CAGAGAGGGCTCTTTCCATCTGATAGAGACCTATACAATATCCATCACTG
CAAAGGCTCAATTAGATCCCAGCAAAATATAGTCTGTTTTGGCCGAGGGC
ATGTACTTTAGGAAGGAAAATGACAGCTTTGCACTCCAGGGCTCAACCAT
GTGTATGTATATGTGAGATGCCCCCCCCACGCCATGCCAGGGGTGGCATA
CACTTTAATACTAAGACTCGGGAGGTAGAGTCAGGCATGTCTCTGAATTT
GAGTTCAGCATACTCAACATAGAGAGTTCCAGGGCAGCCATAGTTGTGGT
AAGACTGTCTCAGAATAAAAAAAACACAAAACTAAAGATACTGGATGTCA
GCAGGTTTGACAATACCTGCCTCCTGTGGTGCGCTGCCTGTTACTGTACA
AGAGGCTTGTCACCAGCCTGGTCTCCGGCCATTAATTAGGTCCTAAGCAA
CCCCTTGTTAACCTTCGGTCTTACCCAG
NCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCGGGGTGGGCTACCTCCC
CGAGTTGTTTGTGGGGGAGGTTTCTTAGGCACACACACAGTATACACAGT
TCCCACTGCTGTTGGCGGCATGCCAGAACTGGAAGCTCCTTCCCGACTGG
CTCATGCTGGCTGGAGCACTGAGCAGGCTGCAAGGGGAGAATTCTCATCA
AGGGTCCTGCTCAGCTGTGGGCCTCATGTCTTAGGCTGTCAGCATGACAT
CCATGCAAGATCCCCACAGGTGCAATAGTGGCAGGATACACGGGTACAAA
AAACTACGTTCCATTTGGATTGAAGACCCACTCCACAGTGGGGACTGTCT
TAGTCAGGGTTTCTATTCCCCCACAAACATCATGACCAAGACGCAAGTTG
GGGAGGAAAGGGTTTATTCGGCTTACACTTCCACATTGCTGTTCATCACC
AAGGAAGTCAGGACTGGAATTCAAGTATGTCATAAAGCAGGATCTGATGC
AGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTTCACCTGTCTTGCT
CACCCTGCTCTCTTATACATCCAAGACTACCAGCCCAGATATGATCCCAT
CCCCAAGGCGTCTTTCCCCCTTTGATCACTAATTGAACACATGCCCTACA
GATGCACCTCATTGCAGCCTTTCCCCTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_l19.b1 MSMg01no144_l19.b1 CHROMAT_FILE:
MSMg01no144_l19.b1 PHD_FILE: MSMg01no144_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:38 2005
         (492 letters)



>mm_chr11_60068052_60068943
          Length = 892

 Score =  820 bits (424), Expect = 0.0
 Identities = 473/498 (94%), Gaps = 18/498 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcagtcctgatta---tcagtcctgttgcagcagcaaaggggacggggaggaggga 60
           ||||||||||||||  |   || |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagtcctga--agactc-gtcctgttgcagcagcaaaggggacggggaggaggga 260

                                                                       
Query: 61  aggtccactgaaagagagaagggagagcatgaggtgtgggatacgctagatttttcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aggtccactgaaagagagaagggagagcatgaggtgtgggatacgctagattttttctgg 320

                                                                       
Query: 121 gaagaatatcttggccactctctttgttgaaatgagatgcacaaagtgagcagggatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaatatcttggccactctctttgttgaaatgagatgcacaaagtgagcagggatggc 380

                                                                       
Query: 181 cacaaggtactcaaaaaacagcacagagagggctctttccatctgatagagacctataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaaggtactcaaaaaacagcacagagagggctctttccatctgatagagacctataca 440

                                                                       
Query: 241 atatccatcactgcaaaggctcaattagatcccagcaaaatatagtctgttttggccgag 300
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 441 atatccatcactgcaaaggctcaattagatcccagtaaaacatagtctgttttggccgag 500

                                                                       
Query: 301 ggcatgtactttaggaaggaaaatgacagctttgcactccagggctcaaccatgtgtatg 360
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 501 ggcatgtactttaggaaggaaaacgacagctttgcactccagggctcaaccacgtgtatg 560

                                                                       
Query: 361 tatatgtgagatgc------cccccccacgccatgccaggggtggcatacactttaatac 414
           ||||||||||||||      |      ||||||||||||||||| |||||||||||||||
Sbjct: 561 tatatgtgagatgcaggtggc------acgccatgccaggggtgacatacactttaatac 614

                                                                       
Query: 415 taagactcgggaggtagagtcaggcatgtctctgaatttgagttcagcatactcaacata 474
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 615 taagactcgggaggtagagtcaggcatgtctctgaatttgaggtcagcatactcaacata 674

                             
Query: 475 gagagttccagggcagcc 492
           ||||||||||||||||||
Sbjct: 675 gagagttccagggcagcc 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)