BAC Information

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BAC

Clone NameMSMg01-145B22
Chromosome11 (Build37)
Map Location 32,165,751 - 32,244,116
singlet/doubletdoublet
Overlap geneMare, Hba-x, Hba-a1, F830116E18Rik, Hbq1
Upstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg
Downstream geneSh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145B22.T7 (MSMg01no145_b22.b1)MSMg01-145B22.TJ (MSMg01no145_b22.g1)
ACCAG349007AG349008
length700698
length of high quality
(start - end)		656 (45 - 700)623 (76 - 698)
definitionCHROMAT_FILE: MSMg01no145_b22.b1 PHD_FILE: MSMg01no145_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:07 2005CHROMAT_FILE: MSMg01no145_b22.g1 PHD_FILE: MSMg01no145_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,243,617 - 32,244,116)(32,165,751 - 32,166,373)
sequence
NNTTCATAATTTGCGGCGCTAAACGACTCCTATAGTGCGAGAATCCGCGG
AATTCTCTGAAGCTGTCCTCTGCCCTCCATACACGGGTTGTGACACGCCT
GCACTAGTGTACATATGCACAGAAGCCAATGAACAATGAGCCAACAAGAG
CAGCTCTGGGAGGCAACGCCCTCCCAACCTTAAGCTTTCAGTTTACCAAG
CCAACACCCTTAACATCATTCCTGTACATCCCAGTTTAACCCTTAACACC
ACCGGCCAACTGGACTTCGGGCTCTTCCCGTTCTGGCATAATACTTAGCC
TGTGAGAGAGGTTTATTATCCCACCGTCTCTTATGGGGTCTGCCTTAGGG
TTTTACTGTTGTGAACAGACACCATGACCAAGGCAACTCTTATAAAGGAC
ATTTAATTGGGGCTGGCTTACACGTTCAGAGGTTCAGTTCATTATCATCA
TGGTGGGAGCATGGCAGCAATCAGGCAGGCATGGTGCAGGAGGAGCTGAG
AGTTCTACATCTTCATCTGAAGGCTGCTAGCAGAATACTGGCTTCTAAGC
AGCTAGGAGGAGTGTCTTATAGCCCATAGCCCACACCCACAGTGACACAC
CTACTCCAACAAGGCCACACCTACTCCACACCTTCTAATATTGCCACTCC
CTAGGCTGGGCATATACGCACCATCACAAAGGCCTTCTCAGGTTTTCTCT


NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAAGGTGAATCCAAACAGCTC
CGGAAAGAGAAAAACAGGCGTGTTCCCAATACCACCTTGCACCATAAAAC
TGTCAGACACAGCTTCCTGCCAACAGTCTAATAAAGACTAAAAATTAATC
AGTTTAAAACGTGATCATGAGCCCTCAGACTCAACCACATGACTCAAGGC
TGGTCTGTTCCTAAAAATATTCTATAAAAGAATAGTTTACAGAACGGACA
TGCACAGTTTATGTGGTTTTTGTTTCAGTTGGGTGGTAGTATTGGGGCAT
GGGTACATGGCCTACAAGCACAGGTGAAGGCCAGAGCAAAATGTAAAGTG
TCCTCCTTTCTCTGTACCTTACTGTCTCGAGGCAGGGTCTCTCACGGAAT
CAGCTTACCCTTCAGGCTAGGCTGGCTGGCCAGGGAGCTCTTGATCAACC
CATCTCTATCAGTCAGTGATGACATTACACACACCACAGCCAAGCCAGTC
TTTTTACATAAGTGCTGGGAATTTAGGGGTCTCATGCTGGCAGAGCCAGT
GCCCAGCCTGAAAAGACTGANNACTACTGCCCTCAACAGGGGCTGGACGA
ATAAACCAGAGTACGCTCATCTCATGGACTTCACTGCAGTCATTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_b22.b1 MSMg01no145_b22.b1 CHROMAT_FILE:
MSMg01no145_b22.b1 PHD_FILE: MSMg01no145_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:07 2005
         (656 letters)



>mm_chr11_32243617_32244672
          Length = 1056

 Score =  905 bits (468), Expect = 0.0
 Identities = 492/500 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctgaagctgtcctctgccctccatacacgggttgtgacacgcctgcactagtg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaattctctgaagctgtcctctgccctccatacacgggttgtgacacgcctgcactagtg 441

                                                                       
Query: 66  tacatatgcacagaagccaatgaacaatgagccaacaagagcagctctgggaggcaacgc 125
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 tacatatgcacagaagccaatgaacattgagccaacaagagcagctctgggaggcaacgc 381

                                                                       
Query: 126 cctcccaaccttaagctttcagtttaccaagccaacacccttaacatcattcctgtacat 185
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 cctcccaaccttaagctttcagtttaccaagccaatacccttaacatcattcctgtacat 321

                                                                       
Query: 186 cccagtttaacccttaacaccaccggccaactggacttcgggctcttcccgttctggcat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cccagtttaacccttaacaccaccggccaactggacttcgggctcttcccgttctggcat 261

                                                                       
Query: 246 aatacttagcctgtgagagaggtttattatcccaccgtctcttatggggtctgccttagg 305
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 260 aatacttagcctgtgagagaggtttattatcccaccttctcttatggggtctgccttagg 201

                                                                       
Query: 306 gttttactgttgtgaacagacaccatgaccaaggcaactcttataaaggacatttaattg 365
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 200 gttttactgctgtgaacagacaccatgactaaggcaactcttataaaggacatttaattg 141

                                                                       
Query: 366 gggctggcttacacgttcagaggttcagttcattatcatcatggtgggagcatggcagca 425
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 140 gggctggcttacaggttcagaggttcagtgcattatcatcatggtgggagcatggcagca 81

                                                                       
Query: 426 atcaggcaggcatggtgcaggaggagctgagagttctacatcttcatctgaaggctgcta 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  atcaggcaggcatggtgcaggaggagctgagagttctacatcttcatctgaaggctgcta 21

                               
Query: 486 gcagaatactggcttctaag 505
           |||||||| |||||||||||
Sbjct: 20  gcagaatattggcttctaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no145_b22.g1 MSMg01no145_b22.g1 CHROMAT_FILE:
MSMg01no145_b22.g1 PHD_FILE: MSMg01no145_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:07 2005
         (623 letters)



>mm_chr11_32165551_32166573
          Length = 1023

 Score = 1162 bits (601), Expect = 0.0
 Identities = 617/623 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaaaggtgaatccaaacagctccggaaagagaaaaacaggcgtgttcccaataccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaaaggtgaatccaaacagctccggaaagagaaaaacaggcgtgttcccaataccac 260

                                                                       
Query: 61  cttgcaccataaaactgtcagacacagcttcctgccaacagtctaataaagactaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgcaccataaaactgtcagacacagcttcctgccaacagtctaataaagactaaaaat 320

                                                                       
Query: 121 taatcagtttaaaacgtgatcatgagccctcagactcaaccacatgactcaaggctggtc 180
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatcggtttaaaacatgatcatgagccctcagactcaaccacatgactcaaggctggtc 380

                                                                       
Query: 181 tgttcctaaaaatattctataaaagaatagtttacagaacggacatgcacagtttatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcctaaaaatattctataaaagaatagtttacagaacggacatgcacagtttatgtg 440

                                                                       
Query: 241 gtttttgtttcagttgggtggtagtattggggcatgggtacatggcctacaagcacaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttttgtttcagttgggtggtagtattggggcatgggtacatggcctacaagcacaggt 500

                                                                       
Query: 301 gaaggccagagcaaaatgtaaagtgtcctcctttctctgtaccttactgtctcgaggcag 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gaaggccagagcaaaatgtaaagtgtcctcctttctctgtatcttactgtctcgaggcag 560

                                                                       
Query: 361 ggtctctcacggaatcagcttacccttcaggctaggctggctggccagggagctcttgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtctctcacggaatcagcttacccttcaggctaggctggctggccagggagctcttgat 620

                                                                       
Query: 421 caacccatctctatcagtcagtgatgacattacacacaccacagccaagccagtcttttt 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 caacccatctctatcagtcagtgatgacattacgcacaccacagccaagccagtcttttt 680

                                                                       
Query: 481 acataagtgctgggaatttaggggtctcatgctggcagagccagtgcccagcctgaaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acataagtgctgggaatttaggggtctcatgctggcagagccagtgcccagcctgaaaag 740

                                                                       
Query: 541 actgannactactgccctcaacaggggctggacgaataaaccagagtacgctcatctcat 600
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actgaaaactactgccctcaacaggggctggacgaataaaccagagtacgctcatctcat 800

                                  
Query: 601 ggacttcactgcagtcattaata 623
           |||||||||||||||||||||||
Sbjct: 801 ggacttcactgcagtcattaata 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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