Query= MSMg01no145_l08.b1 MSMg01no145_l08.b1 CHROMAT_FILE:
MSMg01no145_l08.b1 PHD_FILE: MSMg01no145_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:52 2005
(445 letters)
>mm_chr11_116536315_116537162
Length = 848
Score = 804 bits (416), Expect = 0.0
Identities = 439/448 (97%), Gaps = 3/448 (0%)
Strand = Plus / Plus
Query: 1 tctgcttgccttcacttctgagtggactcaggttcaggtcctcagggatttggttgaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcttgccttcacttctgagtggactcaggttcaggtcctcagggatttggttgaata 260
Query: 61 taaatactctg---tttcatgagaaacctttttttggccacttaccaggaacttcttaaa 117
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatactctgatgtttcatgagaaacctttttttggccacttaccaggaacttcttaaa 320
Query: 118 actgtcttttaaaaaaaaagttagcagcctgcttctgaacttggctggtgcctgcctgtg 177
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttcttttaaaaaaaaagttagcagcctgcttctgaacttggctggtgcctgcctgtg 380
Query: 178 tgtagcgcacacagtgccttgtgatggcggctggaatcccaggactatctgataatgctt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagcgcacacagtgccttgtgatggcggctggaatcccaggactatctgataatgctt 440
Query: 238 gttcctaaagtttgtagtttcgatcacttagctgccggtctccttcaggttctttccttg 297
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gttcctaaagtttgtagttttgatcacttagctgcctgtctccttcaggttctttccttg 500
Query: 298 tttctaggttattgccctgtagtgccagagagaaccacatagcctgctgccccccctgcc 357
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 501 tttctaggttattgccctgtagtgccagagagaaccacatagcctgctgctgctcctgcc 560
Query: 358 tttaatttcccaaagagtcatcagacgaccttggagtttgttctgcaagaggagccagta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaatttcccaaagagtcatcagacgaccttggagtttgttctgcaagaggagccagta 620
Query: 418 aggcctcgtgactgtggtcaccctcgga 445
||||||||||||||||||||||||||||
Sbjct: 621 aggcctcgtgactgtggtcaccctcgga 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 848
Length adjustment: 10
Effective length of query: 435
Effective length of database: 838
Effective search space: 364530
Effective search space used: 364530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_l08.g1 MSMg01no145_l08.g1 CHROMAT_FILE:
MSMg01no145_l08.g1 PHD_FILE: MSMg01no145_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:53 2005
(537 letters)
>mm_chr11_116719504_116720440
Length = 937
Score = 1023 bits (529), Expect = 0.0
Identities = 535/537 (99%)
Strand = Plus / Minus
Query: 1 taaaggctgatccagtttggggacagcctgggtctgggctatcgtgagacctggtctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 taaaggctgatccagtttggggacagcctgggtctgggctatcgtgagacctggtctcaa 554
Query: 61 acataaaaaccaacttgatacactcgttggttaaaacttcagtgttcctgagcaacaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acataaaaaccaacttgatacactcgttggttaaaacttcagtgttcctgagcaacaacc 494
Query: 121 caagagtcagacccctgaagtaactactttctacgtgcttgagagatgatctgaagtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caagagtcagacccctgaagtaactactttctacgtgcttgagagatgatctgaagtgct 434
Query: 181 ctccatttaacaagcgataggggaaaaaaagagccactcacctgtaaaacaaaccactga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctccatttaacaagcgataggggaaaaaaagagccactcacctgtaaaacaaaccactga 374
Query: 241 caaacatagagatctgaggtccaacaatggcgaccacggacggagtgatcaaatttgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caaacatagagatctgaggtccaacaatggcgaccacggacggagtgatcaaatttgaag 314
Query: 301 cagagaacacgccataaataattgccaagctgctcaatacacacaacggaaaaaaaagaa 360
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 313 cagagaacacgccataaataattgccaagctgctcaatacacagaagggaaaaaaaagaa 254
Query: 361 caaaaaccttaagtaacgcatcccaaaatttcatgtttaaaattctgcttaggcggccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caaaaaccttaagtaacgcatcccaaaatttcatgtttaaaattctgcttaggcggccag 194
Query: 421 atggccaagtgggcagaggcacctgtgcaagcctggagaccaagttctatccccagaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atggccaagtgggcagaggcacctgtgcaagcctggagaccaagttctatccccagaacc 134
Query: 481 caccacaagagaaccaactcctaaactgccctttgacctccactcatgcactgcggt 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 caccacaagagaaccaactcctaaactgccctttgacctccactcatgcactgcggt 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
