Query= MSMg01no145_o24.b1 MSMg01no145_o24.b1 CHROMAT_FILE:
MSMg01no145_o24.b1 PHD_FILE: MSMg01no145_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:10 2005
(556 letters)
>mm_chr11_89027988_89028943
Length = 956
Score = 1040 bits (538), Expect = 0.0
Identities = 550/554 (99%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 4 gaattcttctctgtagcc-tcaaagggaggcagccctgttggcaccttggttttggtcac 62
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaattcttctctggagccatcaaagggaggcagccctgttggcaccttggttttggtcac 847
Query: 63 atggcctcctgagctagagaaaacacacctcgtgtctgtaagacaatcagtctataaaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 atggcctcctgagctagagaaaacacacctcgtgtctgtaagacaatcagtctataaaca 787
Query: 123 ttcgtcatctcagccctaggaagcaacacactatggtacttccatgttccaaccctgtat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttcgtcatctcagccctaggaagcaacacactatggtacttccatgttccaaccctgtat 727
Query: 183 ccccagcactgtctccaacgatggaggaaccttaagatctaggctctgacttcagttacg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccccagcactgtctccaacgatggaggaaccttaagatctaggctctgacttcagttacg 667
Query: 243 atagtttttaagtaagctgggaaagttcttctatctctctactcatatctcactctaaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atagtttttaagtaagctgggaaagttcttctatctctctactcatatctcactctaaag 607
Query: 303 caggcttgctgagaggctcagaagcaataattgggacacacctagtgtgagtctattaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 caggcttgctgagaggctcagaagcaataattgggacacacctagtgtgagtctattaca 547
Query: 363 tggggggaaaacgccagctcttcactcagcttcccaaaagccttatcctcaagccagagg 422
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tggggggaaaatgtcagctcttcactcagcttcccaaaagccttatcctcaagccagagg 487
Query: 423 aggccacagaaggcctggcattttgaacataagagcccagacctatacttaacaggggat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aggccacagaaggcctggcattttgaacataagagcccagacctatacttaacaggggat 427
Query: 483 gaatcccaggaatgccccaactaggagttggtgcttgtttttgtctaaaggcctagagaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatcccaggaatgccccaactaggagttggtgcttgtttttgtctaaaggcctagagaa 367
Query: 543 cccaaccatccact 556
||||||||||||||
Sbjct: 366 cccaaccatccact 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_o24.g1 MSMg01no145_o24.g1 CHROMAT_FILE:
MSMg01no145_o24.g1 PHD_FILE: MSMg01no145_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:10 2005
(494 letters)
>mm_chr11_88879499_88880392
Length = 894
Score = 888 bits (459), Expect = 0.0
Identities = 485/499 (97%), Gaps = 10/499 (2%)
Strand = Plus / Plus
Query: 1 caggctcttagtattggcattcctgacagacgtgtgatctgtgtcttctcccagaggaat 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggctcttagtattggcattcccgacagacgtgtgatctgtgtcttctcccagaggaat 260
Query: 61 attctattccctttaagcatctttgcagggaacatgtccctgtagatggtacgtgggctt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 261 attctattccctttaagcatctttacagggaacatgtccctgtagatggtatgtgggctt 320
Query: 121 tgaaagatttcttcctttgccacacaaattcttggcgatacttctccaactttgaaggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagatttcttcctttgccacacaaattcttggcgatacttctccaactttgaaggtg 380
Query: 181 cccaaaaagcttctttgctggtcttgttttgagccttgtttgaggccagatcagacttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaaaaagcttctttgctggtcttgttttgagccttgtttgaggccagatcagacttgg 440
Query: 241 gaaacaactaggttcagagaagtggaacaccaaggattaactcaggagtcctgcatgggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacaactaggttcagagaagtggaacaccaaggattaactcaggagtcctgcatgggc 500
Query: 301 tcttctgcagaaaaggagccggacagtcaggaatctttccccagcccccgc-----gcag 355
|||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 501 tcttctgcagaaaaggagccggacagtcaggactctttccccag-----gcagtgtgcag 555
Query: 356 ctcaggctaggaaggcatgcgtccctctgtttatgagagacccaagcaggcaaccaaagc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctcaggctaggaaggcatgcgtccctctgtttatgagagacccaagcaggcaaccaaagc 615
Query: 416 ccagagctgtgcaagatgctttggagttgtgagtggaggggtgtacccttgctgtctggt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccagagctgtgcaagatgctttggagttgtgagtggaggggtgtacccttgctgtctggt 675
Query: 476 acttttctgtttgcagtga 494
|||||||||||||||||||
Sbjct: 676 acttttctgtttgcagtga 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
