BAC Information

Click to search

BAC

Clone NameMSMg01-146C15
Chromosome11 (Build37)
Map Location 98,774,938 - 98,868,942
singlet/doubletdoublet
Overlap geneCdc6, Rara, Gjc1, Top2a
Upstream genePlxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2
Downstream geneIgfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146C15.T7 (MSMg01no146_c15.b1)MSMg01-146C15.TJ (MSMg01no146_c15.g1)
ACCAG349777AG349778
length1,2371,244
length of high quality
(start - end)		769 (86 - 854)623 (127 - 749)
definitionCHROMAT_FILE: MSMg01no146_c15.b1 PHD_FILE: MSMg01no146_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:36 2005CHROMAT_FILE: MSMg01no146_c15.g1 PHD_FILE: MSMg01no146_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:37 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(98,868,174 - 98,868,942)(98,774,938 - 98,775,560)
sequence
CCCTTTCTTTTTTNTTCAATGGGCGCANTAGACTCCTAAGGGAGAGGATC
CGCGGAATTCACTTATTTCTGTACAGCCGTAAAATAAACCAAGTTCTAAC
AAATCCTGGCAGCATTTCCAAAAGGAGTTGTCAAAACAATACTCAAACAA
CAAACGAAGGAAGAAATATGTGGTTATAGGGGTTCTAATCTCTAATGAAT
GAAAAAAATTATGGACGGCTAGCTAAATGGGCGGATCTAGAGGAGACTTC
AGACAACCTACTGCAATTGTCCCTTCTGCAGAACACTATGGCAATTAATG
GTTTTGTGCCAACTCAAGGACGGAAGAAATGATAATTCTGGCAAATGATA
GTTCTGAGTGTTTTTATTTAGTAGTTTATTTTCCACCAGATCCTGTAATA
CTGCCTTTGATCCCTTAGGATTATTTGTATGGACAAAGCACTTCATACCT
GACCTATAATGACTTCATAAACAAGGAACTCATCCTCTTCTCCAACTCTG
ATAATGAAAGGTCTATCCCATCCATGGTAGACGGTACGTGCCGATGGTGT
AGTCTTATTTTATCGTAGAATGGTAACTTACGCCAAAAATTGATAAATTG
AAAATGCTAATGATTGTTCTTTGATTTTAAAGGTTTGAAACCAGGTCAGA
GAAAGGTTTTGTTTACTTGTTTCAAACGGAATGACAAGCGAGAAGTGAAG
GTTGCCCAGTTAGCTGGGTCAGTGGCAGAAATGTCCTCTTATCACCATGG
TGAGGTAAACCCACAATCGTTAATCAGAATGCCTTAGAGCAGAAATAATT
GAAAGTTATTCTTGAAACACATTTGGTACAAGTGTAACCTGCTATATCCA
TCGTAGAAAACAGCCTGGTAAAAGTCTTTGAAAACTAAAATATGATTACC
CTTTTGACCAATAGTTCTATTTCTAAAATTAGCTTCCTATTAGGATATTT
GTCCTGCCAGTTATGTTCATAGATTTTTTTTTTTAAGATTTATTTATTTT
ATAAATTGTAAGTACACTGTTACTTTCCCTCAAAAACTCCCAAAAAAGGG
ATTCCGAACCTCTTTACGGAATGGTTGTGAACCCCCCTGGGGGTTGGGTG
GAAATTTTAACTTTCTGAATTTTTGAAAAAAAAACCCGGGTGGTTTTTAC
CACTTGTAGCCTTTTTTCCTCCCCCCGAATATTTTTTTTTTTATATTAAT
ATAAACAAAGTTGTTCTTCTTAAACACTCCAAAGAAG

NCTTTTCATTTTTTTAGATGGNATGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAAGAAATCTCTTTTCTTAC
CCCCTTCTTTCTGGACCCCTTGAACCTTGTCCAGGGCAGCCTCACACCTG
TGAGCCTCCTGTGTTAGTCTCCCCAGTGCTGAGACTATGAGCGTGTTTCA
CAATACCTGTCTAAGCACTCCATCTTACCTAGTAGGTCCATCTCAGCTTG
CAGCATGGGGTATGGGGCAAGTGGAAGCAACAGTTGAAATGCTGGGTTAA
GCCAGGGAATCGTAAGGGGCTTAATTTCCTTTTAGGATGGTTTTGCTGCT
GGTGGTAATTGTTATTTATCTTCTCAGGTATTGCTAATACCCTAGATCTC
ACGGATTTAATTCTGCCGAGACTTGAAGCTAGAGAAAACTGTAAGCCGCA
GTTATTGAACTTCCCACCTTATACCAGGAATCAGATAGCTGCCATCTTGC
AGGATCGACTTAGTCAGGTGAGTGCCGGCTACTGTGCCAAAATCTGTGGC
AGGGATAATCCCCATGATGGAGAACTAACCATAGGTTTAAAATATTTCCC
TTTGATTGCTTTATTAATGGTGTGGCCAGCTCCTGTGGACCATAATGAGT
GAGAGCATTTTTATGTGAATTTCTGCACACGGTAGCATGAATTGGCTGCT
TCGCTGGTGAAATAAGAGTGGGAATTAGATTCAAACGCTTCCCTAATGGC
TTTTAAAAAGTGGGGCCCGGGCCAGTGTGGCTCCCAAGGTAAAGACACCG
GTCCCCAGCTCTGATGACCTGAGTTCCGCCCCGGAGGCCCACATGGTGTA
AGGAGCCCGGCAGTTGTCCTCTGACCTCCAAGCTGCAGCCCGCATGTTCT
GCCCCACTCGAAATAGAAATAATCAAATGTGATAAATTTTTGAAAATAGG
TCCTATGAGCTTGCCCTGGTTTGTGATTGTCCATTTGTAAAACTAACTCT
CTCAATTACTGCATTCCAAATCCCATAAAATGCTTAACTCCTGGTAATGG
GTTCCCCCTAAAATTTAAATGTATGCCCGTTTTATTTTTAACCTTTTTCT
TATTTTGAACCCTTTACTTTGGTGTGTTTTTTAACTCTTTTCCTCCTTCT
CCCATTTACTTTTTCTTCTCATAATTACTTTTCTTTCGGTTTTTGATTCT
TTTTTGTTTTCTATACAAACTTCTCTTTTCTCGATCGCTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_c15.b1 MSMg01no146_c15.b1 CHROMAT_FILE:
MSMg01no146_c15.b1 PHD_FILE: MSMg01no146_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:36 2005
         (769 letters)



>mm_chr11_98867974_98869142
          Length = 1169

 Score = 1433 bits (741), Expect = 0.0
 Identities = 762/769 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccaagttctaacaaatcctggcagcatttccaaaaggagttgtcaaaacaatactca 60
           ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 969 aaaccaagttctaacaaatcctggcagcattttgaaaaggagttgtcaaaagaatactca 910

                                                                       
Query: 61  aacaacaaacgaaggaagaaatatgtggttataggggttctaatctctaatgaatgaaaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aacaacaaatgaaggaagaaatatgtggttataggggttctaatctctaatgaatgaaaa 850

                                                                       
Query: 121 aaattatggacggctagctaaatgggcggatctagaggagacttcagacaacctactgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aaattatggacggctagctaaatgggcggatctagaggagacttcagacaacctactgca 790

                                                                       
Query: 181 attgtcccttctgcagaacactatggcaattaatggttttgtgccaactcaaggacggaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 789 attgtcccttctgcagaacactatggcaattaatggttttgtgccaactcaaggacagaa 730

                                                                       
Query: 241 gaaatgataattctggcaaatgatagttctgagtgtttttatttagtagtttattttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaaatgataattctggcaaatgatagttctgagtgtttttatttagtagtttattttcca 670

                                                                       
Query: 301 ccagatcctgtaatactgcctttgatcccttaggattatttgtatggacaaagcacttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 669 ccagatcctgtaatactgcctttgatcccttaggattatttgtatggacaaagcacttcg 610

                                                                       
Query: 361 tacctgacctataatgacttcataaacaaggaactcatcctcttctccaactctgataat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tacctgacctataatgacttcataaacaaggaactcatcctcttctccaactctgataat 550

                                                                       
Query: 421 gaaaggtctatcccatccatggtagacggtacgtgccgatggtgtagtcttattttatcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaaaggtctatcccatccatggtagacggtacgtgccgatggtgtagtcttattttatcg 490

                                                                       
Query: 481 tagaatggtaacttacgccaaaaattgataaattgaaaatgctaatgattgttctttgat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 489 tagaatggtaacttacgccaaaaattgataaattgaaaatgctaatgattgttctttcat 430

                                                                       
Query: 541 tttaaaggtttgaaaccaggtcagagaaaggttttgtttacttgtttcaaacggaatgac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttaaaggtttgaaaccaggtcagagaaaggttttgtttacttgtttcaaacggaatgac 370

                                                                       
Query: 601 aagcgagaagtgaaggttgcccagttagctgggtcagtggcagaaatgtcctcttatcac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagcgagaagtgaaggttgcccagttagctgggtcagtggcagaaatgtcctcttatcac 310

                                                                       
Query: 661 catggtgaggtaaacccacaatcgttaatcagaatgccttagagcagaaataattgaaag 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 catggtgaggtaaacccacaatcgttaatcagaatgccttagagcagaaataattgaaag 250

                                                            
Query: 721 ttattcttgaaacacatttggtacaagtgtaacctgctatatccatcgt 769
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttattcttgaaacacatttggtacaagtgtaacctgctatatccatcgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1169
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1159
Effective search space:   879681
Effective search space used:   879681
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no146_c15.g1 MSMg01no146_c15.g1 CHROMAT_FILE:
MSMg01no146_c15.g1 PHD_FILE: MSMg01no146_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:37 2005
         (623 letters)



>mm_chr11_98774738_98775760
          Length = 1023

 Score = 1151 bits (595), Expect = 0.0
 Identities = 616/623 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtccagggcagcctcacacctgtgagcctcctgtgttagtctccccagtgctgagact 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtccagggtagcctcacacctgtgagcctcctgtgttagtctccccagtgctgagact 260

                                                                       
Query: 61  atgagcgtgtttcacaatacctgtctaagcactccatcttacctagtaggtccatctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagcgtgtttcacaatacctgtctaagcactccatcttacctagtaggtccatctcag 320

                                                                       
Query: 121 cttgcagcatggggtatggggcaagtggaagcaacagttgaaatgctgggttaagccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgcagcatggggtatggggcaagtggaagcaacagttgaaatgctgggttaagccagg 380

                                                                       
Query: 181 gaatcgtaaggggcttaatttccttttaggatggttttgctgctggtggtaattgttatt 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatcttaaggggcttaatttccttttaggatggttttgctgctggtggtaattgttatt 440

                                                                       
Query: 241 tatcttctcaggtattgctaataccctagatctcacggatttaattctgccgagacttga 300
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 441 tatcttctcaggtattgctaataccctagatctcacggacagaattctgccgagacttga 500

                                                                       
Query: 301 agctagagaaaactgtaagccgcagttattgaacttcccaccttataccaggaatcagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctagagaaaactgtaagccgcagttattgaacttcccaccttataccaggaatcagat 560

                                                                       
Query: 361 agctgccatcttgcaggatcgacttagtcaggtgagtgccggctactgtgccaaaatctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctgccatcttgcaggatcgacttagtcaggtgagtgccggctactgtgccaaaatctg 620

                                                                       
Query: 421 tggcagggataatccccatgatggagaactaaccataggtttaaaatatttccctttgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcagggataatccccatgatggagaactaaccataggtttaaaatatttccctttgat 680

                                                                       
Query: 481 tgctttattaatggtgtggccagctcctgtggaccataatgagtgagagcatttttatgt 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tgctttattaatggtgtggccagctcctgcggaccataatgagtgagagcatttttatgt 740

                                                                       
Query: 541 gaatttctgcacacggtagcatgaattggctgcttcgctggtgaaataagagtgggaatt 600
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaatttctgcacgcggtagcatgaattggctgcttcgctggtgaaataagagtgggaatt 800

                                  
Query: 601 agattcaaacgcttccctaatgg 623
           |||||||||||||||||||||||
Sbjct: 801 agattcaaacgcttccctaatgg 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |