Query= MSMg01no146_m09.b1 MSMg01no146_m09.b1 CHROMAT_FILE:
MSMg01no146_m09.b1 PHD_FILE: MSMg01no146_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:57 2005
(469 letters)
>mm_chr11_62601164_62602029
Length = 866
Score = 752 bits (389), Expect = 0.0
Identities = 420/437 (96%), Gaps = 15/437 (3%)
Strand = Plus / Minus
Query: 45 ggaaggtaggggctggcttcagcactaggagacctgtgtatcttaaactacccctcggtg 104
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 866 ggaaggtaggggctggcttcagcactaggagacctgtgtatcttaaact-cccctcggtg 808
Query: 105 acttactatgccaaaattccctccaggggtccttttcaggttgctagatgtcacctcaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 acttactatgccaaaattccctccaggggtccttttcaggttgctagatgtcacctcaaa 748
Query: 165 ctcaaccaatcag-atttggaggtgagatctagcaatctccgccttaaggaagctttaaa 223
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctcaaccaatcagaatttggaggtgagatctagcaatctccgccttaaggaagctttaaa 688
Query: 224 ggga-tttaaa----------aaagcaaaacaaaacactgagtctactttaggtagatta 272
|||| |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 687 gggattttaaaaaaacaaaacaaaacaaaacaaaacactgagtctactttaggtagatta 628
Query: 273 tagtggaaatttacttattctagtttgtagaccagagagtttgaggggatacgtcatgag 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tagtggaaatttacttattctagtttgtagaccagagagtttgaggggatacgtcatgag 568
Query: 333 tagagcaactaaattcaagcctagaggagcaacgtgcctgagcatattttacagtaccgg 392
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 567 tagagcaactaaattcaagcctagtggagcaacgtgcctgagcatattttacagtaccgg 508
Query: 393 aaagtagcagtttgttttggattccttgttaacagggagagtgcatttggtgtggtggag 452
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 507 aaagtagcagtttgttttggattccttgttaacagg--gagtgcatttggtgtggtggag 450
Query: 453 gggtttagattatactg 469
|||||||||||||||||
Sbjct: 449 gggtttagattatactg 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 866
Length adjustment: 10
Effective length of query: 459
Effective length of database: 856
Effective search space: 392904
Effective search space used: 392904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_m09.g1 MSMg01no146_m09.g1 CHROMAT_FILE:
MSMg01no146_m09.g1 PHD_FILE: MSMg01no146_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:57 2005
(491 letters)
>mm_chr11_62465298_62466188
Length = 891
Score = 888 bits (459), Expect = 0.0
Identities = 483/495 (97%), Gaps = 8/495 (1%)
Strand = Plus / Plus
Query: 1 gtggcttttcccccgcagtgctggagatagagcccagagccttgtgtgccttttcttctt 60
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggcttttctcttgcagtgctggagatagagcccagagccttgtgtgccttttcttctt 260
Query: 61 tattccattagagccctctttcttacccctgtcctttacttgttggcaaacagtgctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattccattagagccctctttcttacccctgtcctttacttgttggcaaacagtgctgtc 320
Query: 121 tgaatcctcattgtaggttttgccatggcttacactcatggctttccaaccctgcacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatcctcattgtaggttttgccatggcttacactcatggctttccaaccctgcacaca 380
Query: 181 ttgatggctctggtcattggcagaagacacaagactttgagagtagagaccaggacttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatggctctggtcattggcagaagacacaagactttgagagtagagaccaggacttta 440
Query: 241 ccgcttttgcgttagttcttgcctccaagccctgcaggg----tttttgtgatgggccca 296
||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 441 ccgcttttgcgttagttcttgcctccaagccctgcaggggcagt----gtgatgggccca 496
Query: 297 gatggatgctccacatgcagatggtttgtgtcatagctgagaaacatggagcttggggag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gatggatgctccacatgcagatggtttgtgtcatagctgagaaacatggagcttggggag 556
Query: 357 gagggaatctacggcatataaaggaagtagtgagctgttgtctttcaagtgtgcctgtta 416
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 557 gagggaatctacggcatataaaggaagtagtaagctgttgtctttcaagtgtgcctgtta 616
Query: 417 gaagcacaacactgaaaagaggctcaggtgtcaagaggcagggtctttccatccacaaga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaagcacaacactgaaaagaggctcaggtgtcaagaggcagggtctttccatccacaaga 676
Query: 477 tgtgagagtgtgcca 491
|||||||||||||||
Sbjct: 677 tgtgagagtgtgcca 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
