Query= MSMg01no146_p07.b1 MSMg01no146_p07.b1 CHROMAT_FILE:
MSMg01no146_p07.b1 PHD_FILE: MSMg01no146_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:21 2005
(718 letters)
>mm_chr11_48234435_48235552
Length = 1118
Score = 833 bits (431), Expect = 0.0
Identities = 476/491 (96%)
Strand = Plus / Plus
Query: 1 aaataagcagggaaaatggaacaggacatgcctgacacataccagcatgccccgcatatg 60
|||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 201 aaataaacagggaaaatggaacaggacatgggtgacacataccagcatgctttgcatatg 260
Query: 61 tgataagggacaaaaatactccatcccttttctaaggtttgggtaaataccacaaggtgt 120
|||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 261 tgataagggataaaaatactccatccctttcctaaggtttgcgtaaataccacaaggtgt 320
Query: 121 gttgcaaaatgaaagccactgtgcctggggacacacagccagcagttacaagccagagtt 180
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgcaaaatgaaagccaccgtacctggggacacacagccagcagttacaagccagagtt 380
Query: 181 caaatccacatgtttgtctccacggcccacatacttgacctctaaaccaaggctgaccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatccacatgtttgtctccacggcccacatacttgacctctaaaccaaggctgaccaa 440
Query: 241 tcgaaataaaaggacagagctatgttcagcaaagtcttctctaacagccacataaaacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgaaataaaaggacagagctatgttcagcaaagtcttctctaacagccacataaaacta 500
Query: 301 attaaaagccacattaaaaatattgaaattaattaatgcattccaatccacacactacgc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 attaaaagccacattaaaaatattgaaattaattaatgcattcaaatccacacactacgc 560
Query: 361 accaaacatgctatcatagcaacaccaaaatattcacttttaaattaaatcaataaaaac 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 accaaacatgctatcatagcaacatcaaaatattcacttttaaattaaatcaataaaaac 620
Query: 421 tgagatttcactggtcctgttcactatttgggaaactggtgtgaattgtacacttctttg 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tgagatttcactggtcctgttcactatttgggaaactggtgtgaactgtacacttctttg 680
Query: 481 catcttagtgc 491
||||||||||
Sbjct: 681 aatcttagtgc 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space: 784464
Effective search space used: 784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_p07.g1 MSMg01no146_p07.g1 CHROMAT_FILE:
MSMg01no146_p07.g1 PHD_FILE: MSMg01no146_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:22 2005
(654 letters)
>mm_chr11_48370111_48371163
Length = 1053
Score = 1052 bits (544), Expect = 0.0
Identities = 565/576 (98%), Gaps = 10/576 (1%)
Strand = Plus / Minus
Query: 1 gtaacaattttttttatggtttataacttgttaaattctaacaaag----ccccacccac 56
|||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 571 gtaacaattttttttatggtttataacttgttaaattctaacaaagtaaa----atccac 516
Query: 57 aggngcttttgacccagaaattcaattcttaggttttgttctatagtatcagcctagtat 116
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agg-gcttttgacccagaaattcaattcttaggttttgttctatagtatcagcctagtat 457
Query: 117 tttcatattgatccatgcaaaagttattaatttcaatgctgtatattaaagaaagtaaga 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tttcatattgatccatgcaaaagttattaatttcaatgctgtatattaaagaaagtaaga 397
Query: 177 aagtgcctaaatacccagaaaggtgacacattagatgaatgacatatccacatgctaaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagtgcctaaatacccagaaaggtgacacattagatgaatgacatatccacatgctaaaa 337
Query: 237 caccacccaaagtgataagattttgattaatttatttcttaaatttcttctctgtgatat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 caccacccaaagtgataagattttgattaatttatttcttaaatttcttctctgtgatat 277
Query: 297 cattctttaaaggactttaaaaagtctattctctattcagcacaaagctcatgtctgaca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cattctttaaaggactttaaaaagtctattctctattcagcacaaagctcatgtctgaca 217
Query: 357 aactgaacccagtgagttattttttattagttattttaaatttacgtttcaaatgttatc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aactgaacccagtgagttattttttattagttattttaaatttacgtttcaaatgttatc 157
Query: 417 ccctttcctggtttcccctctgaaaaccccctgtcccaccccccc-ttcccctggtcacc 475
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 156 ccctttcctggtttcccctctgaaaaccccctgtcccaccccccccttcccctggtcacc 97
Query: 476 aacccacccactcctgcttccctgtcttggcattcccctatactagggcaattgagcctt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 aacccacccactcctgcttccctgtcttggcattcccctatactagggcaattgagcctt 37
Query: 536 cacaggaccaagggcctcacctcccattgatgtccg 571
||||||||||||||||||||||||||||||||||||
Sbjct: 36 cacaggaccaagggcctcacctcccattgatgtccg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
