Query= MSMg01no147_j15.b1 MSMg01no147_j15.b1 CHROMAT_FILE:
MSMg01no147_j15.b1 PHD_FILE: MSMg01no147_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:14 2005
(371 letters)
>mm_chr11_115062814_115063584
Length = 771
Score = 656 bits (339), Expect = 0.0
Identities = 357/363 (98%), Gaps = 2/363 (0%)
Strand = Plus / Minus
Query: 7 ggaattctctattag-aactgtatcagcaagctgctgcttctcccctcaagcccgattga 65
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggaattctcta-gagcaactgtatcagcaagctgctgcttctcccctcaagcccgattga 510
Query: 66 gtcctcgcgcttgccagtcagctaggccatctttactgagatgcacgtcccagcagggct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 509 gtcctcgcgcttgccagtcagctaggccatctttactgagatgcacgtcccagcaggact 450
Query: 126 aatcttccttctagtatgtcttgcttcaagcatttgaagtctttttgatttctttagttc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatcttccttctagtatgtcttgcttcaagcatttgaagtctttttgatttctttagttc 390
Query: 186 ttttgtgtgtatggtactggggataaagtctgagctcagggcacactggggaagtgtatc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttttgtgtgtatggtactggggataaagtctgagctcagggcacactggggaagtgtatc 330
Query: 246 accagcaagcttcacctcaccagccccaagtctaaagaaaatccaggcacgcttctcatg 305
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 329 accagcaagcttcacctcaccagccccaagtctaaagagaatccaggcacgcttctcatg 270
Query: 306 gggacagacagtgcccctaactctggccagcacaggacaagacagtgaggtaagggtgtg 365
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 gggacagacagtgcccctaactctggccagcacaggacgagacagtgaggtaagggtgtg 210
Query: 366 tgt 368
|||
Sbjct: 209 tgt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_j15.g1 MSMg01no147_j15.g1 CHROMAT_FILE:
MSMg01no147_j15.g1 PHD_FILE: MSMg01no147_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:14 2005
(501 letters)
>mm_chr11_114915647_114916547
Length = 901
Score = 891 bits (461), Expect = 0.0
Identities = 491/501 (98%)
Strand = Plus / Plus
Query: 1 actagtgggaggatagcagttgtagctgggagtgtaggagttgtggctattggagataaa 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 201 actagtgggaggatagcagttgtggctgggagtgtaggagttgtggctattggagacaaa 260
Query: 61 gatacacaccaggtcactacttggttccccagcctgtactgagtatctgtgtggatctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatacacaccaggtcactacttggttccccagcctgtactgagtatctgtgtggatctga 320
Query: 121 tgtcacacaaaatcatatattcacagtagaagttttgagaagtgctgtaagccaaatctc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tgtcacacaaaatcatatattcacagtagaggttttgagaagtgctgtaagccaaatctc 380
Query: 181 aaccacatcctgggtggggctctcaaaggctgaatcaggaggctccttgctcaaagactg 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccacatcctgggtggggctctcaaaggctgaatcaggaggctccttgctcaaagactg 440
Query: 241 gccatctgtgcagtgtcagactttccccccagccctgtctgactctgcctgagggagggt 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gccatctgtgcagtgtcagactttctccccagccctgtctgactctgcctgagggagggt 500
Query: 301 agagagatctctcaggggttcaccaccaccccagactggtgacaaacctataagagagtg 360
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 501 agagagatctctcaggggttcaccaccaccccagactggtgagaaacctgtaagagagtg 560
Query: 361 tgaaggaacacagctcagcctatgacccaaggaccttcccagaggccatgtagggttgcc 420
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 561 tgaaggaacacagctcagcctatggcccaaggaccttcccagaggccgtgtagggttgcc 620
Query: 421 aagcatccttcatatgagaacaattgaagatcactttaactggtggggaaggagatgtag 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 aagcatccttcatatgagaacaattgaagatcactttaacttgtggggaaggagatgtag 680
Query: 481 gttgtttctcagctcctccta 501
|||||||||||||||||||||
Sbjct: 681 gttgtttctcagctcctccta 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
