BAC Information

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BAC

Clone NameMSMg01-147N06
Chromosome11 (Build37)
Map Location 6,558,438 - 6,558,570
singlet/doubletsinglet
Overlap geneRamp3
Upstream geneAnkrd36, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311
Downstream geneLOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147N06.T7 (MSMg01no147_n06.b1)MSMg01-147N06.TJ (MSMg01no147_n06.g1)
ACCAG351004AG351005
length731781
length of high quality
(start - end)
286 (53 - 338)133 (82 - 214)
definitionCHROMAT_FILE: MSMg01no147_n06.b1 PHD_FILE: MSMg01no147_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:31 2005CHROMAT_FILE: MSMg01no147_n06.g1 PHD_FILE: MSMg01no147_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATGCAGTTGACTCCTTCTCAACAGTCTGTTTTACGGGA
ACCTTTATTACTGTGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCC
TTGCGCCGGTCCCGAGTTTTCTTGTATTTTTTCGTCCCGGATTTTTTCTC
GTCCCGGATTTCAGCACCAACTCTTATACGCGTTCTCACGACCGGCCAGG
AAAGAACACAACAAACCAGAATCTTCTGCGGTAAAACTTTATTGCTTACA
TCTTCAGGAGCATGAGCGCAAAACCCCAAGCCCCATAAACGAAAGCCCCC
TTCTTACATCTTTAGGAGCCAGAGCGCCTGCGCGCGCCAGAGCGCAGAGC
AAGAGCTCTATTGTTTACATCTTTACCACCAAGCGAGTAGGCTCCAGAGC
CAAAAGCACAATAATGCGCAAGTACGAGAGAGAATGGCGGAAACCCCGTC
CCCTTTAAGGAGGAGTTATCCTTCGCTTAGGACGCATCACTCCCTGATTG
GCTGCAGTCCATGGTCGAGCTGACGTTCCCGGTAAAGGCAGAGTACAAGT
AGTCTTAAAATACCCTTGGCATATGTGCAGTATATTTGTTTACCATTTAG
AACTTAGGATGTCAGCGCCATCTTGTGACGTTTAACGTGGGGTTGGTTCC
CATCCCCAGTTCAGGTTAACGCCCGCTCCAC
CCCCCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCAACGGCGGGAGTCA
GGGGCGGGGTGGGGGCGTGGCCTGGGTTGGGGCTCTCCGAGGTCCCGCCC
TGGTCCCGCCCCAAGCCTCTTACCTCCGAATGTCGCTGTTGCTGCTAGCC
GGCTGCATCTTAGTTGGCCATGAATACCCCAGCATCAGCGGCTGCACCTT
CTCCCACTGTTGTTGCTGCTTTGTGGTACGGATACATTTGGGTTGGTGCA
CTCCATCTCCTCGGGTCCTTGGGACCTTTGTGTATTCTCTCTTTCCCGCG
TCCAGCCTAGGCTGCGCTCTTTTCTTTCCCCCCAGATTTCGCAAAATACA
CAGGCACCGTTGATTTTAGCATATCCCCCCTTTTTTGTTTTTTCCCCCCC
ATATCTCCTCCCCCCCCTATCATATCTGATTGTTCATAGCTTTCGATCTG
AATTGTCTCGCCCCGTTTCCCTGCTGTTCCCATATTATTCTCTGCTCTCT
CCCGCACGGACTTTTTTCCCGATCTCTCTGATCTTTTCTTTTCTCTTTTT
GTCTCTCTCCCCATTGTCAACATTTTGAGCCACGTTACCTTTCCTTCCCC
TTTCACTGTTTATTATTTTTCTCCACTTTAGTTCCCTACCCCCCCGCTAC
TCTCACTTTTCCTCCTCCCGCGGTATAATCTTCCCATGCCTTCCTTTTTC
CCCCTTATCCTCGCCAGCACCCATTCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_n06.g1 MSMg01no147_n06.g1 CHROMAT_FILE:
MSMg01no147_n06.g1 PHD_FILE: MSMg01no147_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:32 2005
         (133 letters)



>mm_chr11_6558238_6558770
          Length = 533

 Score =  242 bits (125), Expect = 7e-69
 Identities = 131/133 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggcaacggcgggagtcaggggcggggtgggggcgtggcctgggttggggctctccgag 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggcaacggagggagtcaggggcggggtgggggcgtggcctgggttggggctctccgag 260

                                                                       
Query: 61  gtcccgccctggtcccgccccaagcctcttacctccgaatgtcgctgttgctgctagccg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtcccgccctggtcccgccccaagcctcttacctccgaatgtcgctgttgctgcaagccg 320

                        
Query: 121 gctgcatcttagt 133
           |||||||||||||
Sbjct: 321 gctgcatcttagt 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 533
Length adjustment: 8
Effective length of query: 125
Effective length of database: 525
Effective search space:    65625
Effective search space used:    65625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)