Query= MSMg01no147_p14.b1 MSMg01no147_p14.b1 CHROMAT_FILE:
MSMg01no147_p14.b1 PHD_FILE: MSMg01no147_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:43 2005
(648 letters)
>mm_chr11_79601012_79602059
Length = 1048
Score = 839 bits (434), Expect = 0.0
Identities = 469/490 (95%), Gaps = 18/490 (3%)
Strand = Plus / Minus
Query: 5 gaattctgtgctcagcagccagctggggctactggaagttgttggactcctgccaaactc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattctgtgctcagcagccagctggggctactggaagttgttggactcctgccaaactc 431
Query: 65 ttgctatttctgtgccctctgccctttcctgtaatgtttccactccatagcatccccaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgctatttctgtgccctctgccctttcctgtaatgtttccactccatagcatccccaag 371
Query: 125 cccaacccaagaccttcctttgtgtagacccctttgcagtggattcccatagtttccagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cccaacccaagaccttcctttgtgtagacccctttgcagtggattcccatagtttccagt 311
Query: 185 tttctgaatgaatatttccctttattcacacacacacacacacaaaagatttttgtggat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttctgaatgaatatttccctttattcacacacacacacacacaaaagatttttgtggat 251
Query: 245 attacattttgaattaacagttgtctttttctttttgttctcccat-----------cct 293
||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 250 attacattttgaattaacagttgtctttttcttgttgttctcccatgctttaaagatcct 191
Query: 294 cctgtctttc--a-gagttgaagtagatacttatctcattgtttccttgtatgaaatatg 350
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cctgtctttctgatgagttgaagtagatacttatctcattgtttccttgtatgaaatatg 131
Query: 351 ctacactgttg----ctagctgtttccacaattttgactttatgtttggtttttggtagc 406
||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 130 ctacattgttggttgctagctgttttcacaattttgactttatgtttggtttttggtagc 71
Query: 407 ctggttatgtgcttaggtttgtaatctgcacatatcctgtttaggattccttgggattct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ctggttatgtgcttaggtttgtaatctgcacatatcctgtttaggattccttgggattct 11
Query: 467 tgagtatgta 476
||||||||||
Sbjct: 10 tgagtatgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_p14.g1 MSMg01no147_p14.g1 CHROMAT_FILE:
MSMg01no147_p14.g1 PHD_FILE: MSMg01no147_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:43 2005
(609 letters)
>mm_chr11_79503559_79504568
Length = 1010
Score = 1094 bits (566), Expect = 0.0
Identities = 599/614 (97%), Gaps = 9/614 (1%)
Strand = Plus / Plus
Query: 1 tcttcttgaagagggtgggcttagctcctgtttggacagacagcttcttctcaacctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcttgaagagggtgggcttagctcctgtttggacagacagcttcttctcaacctctg 260
Query: 61 tctgacactactgaaggacatcaggggcctgggacgtttcctgctatgtttctagaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgacactactgaaggacatcaggggcctgggacgtttcctgctatgtttctagaatgt 320
Query: 121 ccccatttgccacactgaggtcctgcagagtgcaagggccctctcaggatgcttgccctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ccccatttgccacactgaggtcctgcagagtgcaagggccctctcaggatgcctgccctg 380
Query: 181 accatgtctgccttttcctaggagcggcagcgcatgtctgaccggctggaggacaccagc 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatgtctgccttgtcctaggagcggcagcgcatgtctgaccggctggaggacaccagc 440
Query: 241 ctgcgactgaaggacgagatggacctttacaagcgcatgatggacaagctgcggcagaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcgactgaaggacgagatggacctttacaagcgcatgatggacaagctgcggcagaac 500
Query: 301 cgcctggagttccagaaggagcgggaggcgacgcaggaggc----caccctcaggccagg 356
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 501 cgcctggagttccagaaggagcgggaggcgacgcaggaggtgagtcac----aggccagg 556
Query: 357 gcccccggggctccactcagtgttactgctgcagccaacaggcttctctccc-gcacagc 415
|||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||
Sbjct: 557 gcccccggggctccgctcagagttactgctgcagccaacaggcttctttccccgcacagc 616
Query: 416 tcatcgaggacttgcggagagagctggagcacctgcagatgtacaagctggactgcgagc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcatcgaggacttgcggagagagctggagcacctgcagatgtacaagctggactgcgagc 676
Query: 476 ggccaggtaggggccgcagctcctctggccttggcgagttcaacgccagagcccgggagg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggccaggtaggggccgcagctcctctggccttggcgagttcaacgccagagcccgggagg 736
Query: 536 tggaacttgaacatgaggtcaagcgtctgaagcaggtaggccccagagccatgtccagtg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tggaacttgaacatgaggtcaagcgtctgaagcaggtaggccccagagccatgtccagtg 796
Query: 596 gctttgaaggtgga 609
||||||||||||||
Sbjct: 797 gctttgaaggtgga 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
