BAC Information

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BAC

Clone NameMSMg01-148F10
Chromosome11 (Build37)
Map Location 36,492,843 - 36,493,211
singlet/doubletsinglet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148F10.T7 (MSMg01no148_f10.b1)MSMg01-148F10.TJ (MSMg01no148_f10.g1)
ACCAG351361AG351362
length713851
length of high quality
(start - end)
370 (45 - 414)---
definitionCHROMAT_FILE: MSMg01no148_f10.b1 PHD_FILE: MSMg01no148_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:12 2005CHROMAT_FILE: MSMg01no148_f10.g1 PHD_FILE: MSMg01no148_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATGCGCGGAAT
TCAACCCTTTTGCCAGCAGGAGCCTTACAGCTTCTCTTCCACTCTGAGTC
CTCTGTCCTCTGGCCAGCAGCTTTCTGTTCAGCCACTGTGTGTTCTCCAC
TCCTTTTACTGCCTTAATAATCAGTAGAGTTACATCTGAGCGTATCCAAG
ATGGGGGTACTTCTTTATTTGGGTCCAAGCAAAACACATATCCTTCTATT
GGCAAAGCATGAAAAGAGTTATGCTCTGGCATAACAAGATTAAGCAAGCC
CACTTTGAATACCACATTGTGATTGGGGCAGGCAAAAGTGTCTTATTCTT
TTTGCACCAATTCAAATTCTACATCTGGCTCACATAGGAATTCCAAACTA
CAAGATGCTGAGGCCCCCCGCCCAGACTCTTAGACTATGACGTGGTAGAA
ATTCAAAGAAGGACTATTGAGTTATCTCGCTATTGTTGTTTAGGTTTTGT
TTTGATTTTCCTGAACCGTCAAGTGATCTAACTCTGGTGCATGCATTTGA
CCTTTTGATCCTACACAATTCTGATTTTTGAGCAGATGCCCCAATTGAAA
GGATGTGCGCCACCTCTTCCAGCGATTTCACAACTGTGCTGGATCTTGCT
ACCATGTTATAACAGGACATGATCTCACCTATACCAATTTTCTTTCCCAC
ACTTTATTTTTTC
CAATACAGTGNNTNNCCTGNNNNNCGCCTGNNCTCTNAATTTNNNTGCNC
TATNNAANNTTCCCCGNNATTCTTANATGTTGANACCTCCCTGGTNNCCC
CNTTATCAAATGNTTNNNNTGGCCNNNNNNNNNNNNATGACTCCCCCTCC
NCATGTNNTTTACNTANNTTTCCTANCTTGNNNCCTGCTCCNTGNTGCTT
TGNNNNNTTTTCTTNTCTTTNCCNTTTTGNTTNNNTCCTGNTTCCCTCCC
CCCCCNTTTTTTTTTCCATTTGTCCNNTGGNTTNCCNTTNNTTTCCNAAC
CCCCNNTCNCTTACCTTTCCTTGTCCTNTTTNCCTTCCNNTTTTTTTCCT
TTTTTCCCTTNCCTTTCCTCNNTTTTCCCCCCTCCCCTTTTTTTTTTCTC
TCTTNNNNCCCNCTTTTTTTTCTTTTTTNTTNTTTTTTTTTTTTCCCCCC
CCCCCCCCTTTTTTTNCNTCCTCCTCTTTTTTTTTTTCTTTCCTTTTTTT
CCCTTCCCCTNTTTTCTNNNNCCCCTCTCCTACCCCAAAAAAAAAAAAAA
GACTACTATTCTAAACAACTTTTNNNNCTNCTTNCTNTTNNNCCTTTTCT
NTNTTCCTCCTTTCNTTTCTTAAAGAAAAAGAAAAGAAAAGACTAATCCC
TTCTTNCNCCCCTTTTNTTTCCCTCTTCTCCCTCNTCTTTTTCCCTCCTC
TCCTCTGTGAGGGAGAAGAGAAGTCTTTCTTCTTTTNCCCCCCCCCTCTC
TTGGCGTGGGGAAAGAAAGAAGACNCCTTCTTTTTTNNTNNTTTCTCCCC
TTTTCTTTTTCTCCTCGGCCGAGGAGAAGACTTTAGTCTTTTTCACTCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_f10.b1 MSMg01no148_f10.b1 CHROMAT_FILE:
MSMg01no148_f10.b1 PHD_FILE: MSMg01no148_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:12 2005
         (370 letters)



>mm_chr11_36492642_36493412
          Length = 771

 Score =  661 bits (342), Expect = 0.0
 Identities = 362/372 (97%), Gaps = 7/372 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcaacccttttgcc----agcaggagccttacagcttctcttccactctgagtcc 57
           |||||||||||||||   |    |||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggaattcaacccttt---cagaaagcaggagccttacagcttctcttccactctgagtcc 514

                                                                       
Query: 58  tctgtcctctggccagcagctttctgttcagccactgtgtgttctccactccttttactg 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 513 tctgtcctctggccagcagctttctgttcagccactgtgtgttctccactccttttaccg 454

                                                                       
Query: 118 ccttaataatcagtagagttacatctgagcgtatccaagatgggggtacttctttatttg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccttaataatcagtagagttacatctgagcgtatccaagatgggggtacttctttatttg 394

                                                                       
Query: 178 ggtccaagcaaaacacatatccttctattggcaaagcatgaaaagagttatgctctggca 237
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 393 ggtccaagcaaaacacatatccttctattggcagagcatgaaaagagttatgctctggca 334

                                                                       
Query: 238 taacaagattaagcaagcccactttgaataccacattgtgattggggcaggcaaaagtgt 297
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 333 taacaagattaagcaagcccactttgaataccacattgtgactggggcaggcaaaagtgt 274

                                                                       
Query: 298 cttattctttttgcaccaattcaaattctacatctggctcacataggaattccaaactac 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cttattctttttgcaccaattcaaattctacatctggctcacataggaattccaaactac 214

                       
Query: 358 aagatgctgagg 369
           ||||||||||||
Sbjct: 213 aagatgctgagg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space:   275082
Effective search space used:   275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)