BAC Information

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BAC

Clone NameMSMg01-148H10
Chromosome11 (Build37)
Map Location 117,520,626 - 117,671,488
singlet/doubletdoublet
Overlap geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2
Upstream geneOTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
Downstream geneTk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148H10.T7 (MSMg01no148_h10.b1)MSMg01-148H10.TJ (MSMg01no148_h10.g1)
ACCAG351453AG351454
length726713
length of high quality
(start - end)
296 (72 - 367)216 (73 - 288)
definitionCHROMAT_FILE: MSMg01no148_h10.b1 PHD_FILE: MSMg01no148_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:22 2005CHROMAT_FILE: MSMg01no148_h10.g1 PHD_FILE: MSMg01no148_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,520,626 - 117,520,921)(117,671,273 - 117,671,488)
sequence
TCAAAATTTGCGGCGCTAAACGACTACTATATTCTGAGCTCGGCGGAATT
CTGTGGCTTTTCTATAAAAGGGATTAAGCAAGGATAAGAATGTAGCTTCT
GGAGTATGTGTCTCTTACAGGCCAATGAATTTAAATGCTTTTTCTAGGAA
TTTGAATATGGAGTTGTCACCATCACACACACCCCTCCCTTGGCCTATTT
GTTGCAACACATCTTTGCTGTTATAAACACATGAGCTCACCTGGCCATGT
ATAGTCACAAGGCCGAGGAGCCCTTTGGGAGATGCTTCCCTAGAGAGCAG
GCTGAGTTGGACTTTCCATTTTGCTTCTTCATAATCCACCTTTCTGCCAC
AACAGTTTTGTAAATTGTCAGATCTCTGACATTGAAGCTGGTAGCCGTCT
TTTTTTTTTTTTCTCCTCCCTCCCAAATGATCCCCCGGGAGCCCTCAGTC
TTCCGTCTTCAGACCTCTGGCAGACAATATCCCTTTTTTCCTTTTTATCC
TTTTCACTCCGGCCCTACTCGATCTGGCCCTAATATCCATTTTTTTACCA
TATGCAATTATCCCATTCCCTGTTTACAGACTTACCAAAATACGGGTGTC
TTTATCCCCTTAACACACGGTTGTTAACTCACTTTGACACCTTTTGGCAC
ATTTTAACCATTCATTTTTGTTAAAAACCATTATCGCTATTTTAACCATT
ATTTATTCCTCCCCCTCTTATCTTCG
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTAGGCTGGGAGCCGCGGCGTGCCGGC
CACCTGCTGTGCCGTGCCCCTCTCCGGTCCCTCCCAATGCCAACAAGGCG
ACAGGCCTGCCTCCCCGGAGAACTTCGGGGACGTCCCGCACCAGAGCGGC
CTGGACCAGTGGTCCAGGGTGCGGCGGGGCCCGGCCCGGAGTTGGGGAGA
CAAGGTCCGGAGTGGAACAGGCGACAAAACCCACGGGCTGGACGGGACAG
AGACGCGGAGGGGCACGTTTCCCCGCGCTCTCCGAACGGCCCAGGACGCG
CAGCCGCCGCCACCTGTCGCGCTCTGCGGACCGCGTCCCCACGGGCTCTG
GTATTCATTTTCTNACAAACCCCTTCCTCGCTGTTGCATTCACCATTGCT
CATGACGCGCGCCAACACCTGAAGCTGATACCTCATGTGCCGCCCCTTAA
CTATCCGCCCTAGTTGGTCGTGCCTTATTCCCGATTCTCATGTCTCTGTC
ATCTCCCTATCCCGCTTTGATATCTCTCTAACTCGTAAAACCCGCCCTCC
TTTTTTTCCCTTTTCATTTTCCCTAACCGCCCCTTTTACCCCTCCTTATA
ATCCCCCATAAAACGCAATCCCCTACCTTTTATCCTCCTCTCCACTATTA
TATCCTCACTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_h10.b1 MSMg01no148_h10.b1 CHROMAT_FILE:
MSMg01no148_h10.b1 PHD_FILE: MSMg01no148_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:22 2005
         (296 letters)



>mm_chr11_117520426_117521121
          Length = 696

 Score =  542 bits (280), Expect = e-158
 Identities = 292/296 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattaagcaaggataagaatgtagcttctggagtatgtgtctcttacaggccaatgaatt 60
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 gattaagcgaggataagaatgtagcttctgcagtatgtgtctcttacaggccaatgaatt 260

                                                                       
Query: 61  taaatgctttttctaggaatttgaatatggagttgtcaccatcacacacacccctccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatgctttttctaggaatttgaatatggagttgtcaccatcacacacacccctccctt 320

                                                                       
Query: 121 ggcctatttgttgcaacacatctttgctgttataaacacatgagctcacctggccatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcctatttgttgcaacacatctttgctgttataaacacatgagctcacctggccatgta 380

                                                                       
Query: 181 tagtcacaaggccgaggagccctttgggagatgcttccctagagagcaggctgagttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 tagtcacaaggccgaggagccctttgggagatgcttccctagagagcaggctgagttggt 440

                                                                   
Query: 241 ctttccattttgcttcttcataatccacctttctgccacaacagttttgtaaattg 296
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ctttccattttgcttcttcataatccacctttctgccacaacagttttttaaattg 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no148_h10.g1 MSMg01no148_h10.g1 CHROMAT_FILE:
MSMg01no148_h10.g1 PHD_FILE: MSMg01no148_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:22 2005
         (216 letters)



>mm_chr11_117671073_117671688
          Length = 616

 Score =  418 bits (216), Expect = e-121
 Identities = 216/216 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaggctgggagccgcggcgtgccggccacctgctgtgccgtgcccctctccggtccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cctaggctgggagccgcggcgtgccggccacctgctgtgccgtgcccctctccggtccct 357

                                                                       
Query: 61  cccaatgccaacaaggcgacaggcctgcctccccggagaacttcggggacgtcccgcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cccaatgccaacaaggcgacaggcctgcctccccggagaacttcggggacgtcccgcacc 297

                                                                       
Query: 121 agagcggcctggaccagtggtccagggtgcggcggggcccggcccggagttggggagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agagcggcctggaccagtggtccagggtgcggcggggcccggcccggagttggggagaca 237

                                               
Query: 181 aggtccggagtggaacaggcgacaaaacccacgggc 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 aggtccggagtggaacaggcgacaaaacccacgggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)