BAC Information

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BAC

Clone NameMSMg01-148H12
Chromosome11 (Build37)
Map Location 35,819,536 - 35,819,867
singlet/doubletsinglet
Overlap genenone
Upstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneOdz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148H12.T7 (MSMg01no148_h12.b1)MSMg01-148H12.TJ (MSMg01no148_h12.g1)
ACCAG351457AG351458
length733739
length of high quality
(start - end)
332 (75 - 406)125 (76 - 200)
definitionCHROMAT_FILE: MSMg01no148_h12.b1 PHD_FILE: MSMg01no148_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:22 2005CHROMAT_FILE: MSMg01no148_h12.g1 PHD_FILE: MSMg01no148_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTACCTTTACTTTAGGAGTCAGAGGAAAGCTAATGGTTTAGGATT
TTATTATTTTCAGATCTTAGAAGAAGAGCACATACCTAATAAGCGATCAA
AGCTTGAAATTCACTGGTGGTTCATATGTGTTATACACAGAGCCTGGAGG
TTGCACTGCGGTGTTTTGGAACAGAGTCTCTCTGCATAGCCCAGGCTGTC
TTGAAGGAACTCACCATGGCGACCAAGCTCAAACTCTCAGAGATCTGCCT
GCCTTTTCTTTTCTCCCACCTCTTGGGATTAAAGGGATGTACTTCCACAC
CCAGCAACAGTGCTTTTAGTAATTTTATGTTTATAACAGAGTTTTATTGT
TTGGAATGTTCTTTTTGCAACCCCGCATCTGGGTTCAAGAACTTCAGATT
TGAGTTTGCTCGTTTGTTTGTTTGTTGGCCCGTTGTTTCCCTTTCTTTTT
TATAATCATTCCATTTTCTCTCCCTATCATTTTCTTTCTTTATCTCACCC
CTTTTAATTTTTCACTTCACCCTTTCTCTCCTTTTTCCTTATTTCCTCCA
CTTTTCTCTCACTTTTACTCACCTTCCTTACTCCTATTTCCTCCCTTTTT
CCCCCCCCTTTCACCTTCTCTTTTCTTTCTCTCCATTTTTTCTATTTTAT
TACACATTTTTTTTTCCCCACCACTTTTCTTAC
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGTAGCGACGCCTACTGGTTGCAC
GGGGGACCTGAAGACAGCCTCATACTTAATTGTTTCAACTAGAGGTGGCT
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTATGTG
TATGAGTACACTGTAGCTGTCTTCACACACACCAGAGAGGGTTACCCATT
ACAGATGGCTGTGAGCCACCATGTGGGTGCTAGAACTTAAACTTAGGACC
TGGGGCACAGAAGACAGTGCTTTGAACTGCTGACCCATCTCTCCAGTCCC
AGAACAGTGGACCCTTACCCACCCAGTTGTCTACCTATTAAAGATCAAGA
TAGTATGGAATTTTTCANACANCCCCGATTTNCAACTTATGTCCATTCCA
TTTCTCATCCCACTATCCCAAATGCCGCCCACACTTGCTTCCTGCCCCCT
ACTCCCTCACCAAAACTCCCCCCAGCACCTTCTTGTATCTCCACTCCGAT
AAGCTTTACTCCCCTTTCCTTCCTTAATTTCGCGCCTATCCTTCAAAACC
CCCCCCTTAATAATACCCTCCAAAAACCCTTACCCCTAATCTTCCGCCAT
TTACCCCCCCCCTAATTACCCTCCTCTATAATCCTTAACCCCCTATCTCA
TATCCCCCCCCTCCACCTCCTTTTTACCCCGCACTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_h12.b1 MSMg01no148_h12.b1 CHROMAT_FILE:
MSMg01no148_h12.b1 PHD_FILE: MSMg01no148_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:22 2005
         (332 letters)



>mm_chr11_35819529_35820260
          Length = 732

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaggaaagctaatggtttaggattttattattttcagatcttagaagaagagcacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cagaggaaagctaatggtttaggattttattattttcagatcttagaagaagagcacata 280

                                                                       
Query: 61  cctaataagcgatcaaagcttgaaattcactggtggttcatatgtgttatacacagagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cctaataagcgatcaaagcttgaaattcactggtggttcatatgtgttatacacagagcc 220

                                                                       
Query: 121 tggaggttgcactgcggtgttttggaacagagtctctctgcatagcccaggctgtcttga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 219 tggaggttgcactgcggtgttttggaacagagtctctctgcatagcccaggctgtcctga 160

                                                                       
Query: 181 aggaactcaccatggcgaccaagctcaaactctcagagatctgcctgccttttcttttct 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aggagctcaccatggcgaccaagctcaaactctcagagatctgcctgccttttcttttct 100

                                                                       
Query: 241 cccacctcttgggattaaagggatgtacttccacacccagcaacagtgcttttagtaatt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  cccacctcctgggattaaagggatgtacttccacacccagcaacagtgcttttagtaatt 40

                                           
Query: 301 ttatgtttataacagagttttattgtttggaa 332
           ||||||||||||||||||||||||||||||||
Sbjct: 39  ttatgtttataacagagttttattgtttggaa 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)