BAC Information

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BAC

Clone NameMSMg01-148H18
Chromosome11 (Build37)
Map Location 22,541,678 - 22,541,877
singlet/doubletsinglet
Overlap genenone
Upstream geneAV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827
Downstream geneLOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148H18.T7 (MSMg01no148_h18.b1)MSMg01-148H18.TJ (MSMg01no148_h18.g1)
ACCAG351468AG351469
length702720
length of high quality
(start - end)
230 (77 - 306)344 (74 - 417)
definitionCHROMAT_FILE: MSMg01no148_h18.b1 PHD_FILE: MSMg01no148_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:24 2005CHROMAT_FILE: MSMg01no148_h18.g1 PHD_FILE: MSMg01no148_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCAAAATTGCGGCGCTAAACGACTCCTAATTTTCGGAGTGGGCGGAAT
CTCTAAGAGTGCTGGACTCAAATCCATCAGGAAGAATTACCCCTCAGCAC
ACCAACCACTATTACACCCGTATGTTCTTCTTGCCTAGCTGGTTGGTATT
ACTGCACACAGGGTCAACCTGCAGCTCTGCAGCTGGAGAGATCATAGATC
CTAGTGGAGAAGTTACTGCTTTTGTGCTGCCAAATGAATATGATGTGTTT
GTCTTCGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAC
TCTTCCTTCTTTTTCAATAATTTCCNNACNAACAGNCCAGATGCCATTCC
CTTCATAGGCTGCCCCCCCCCACTCCCCATTCTATACCTGGCTCCCATCC
ATGAGGATGCCCCCCCCCCCACCCTTCCATCCCTCCCCATTCGCTGGGGC
CTCCAGTCTCTTGAGGGTTACTGAATCTTCTCTCACTGAATGTAGTCCTC
CGTGTACATGTGCTGGAAACCTCATATTAGCTGGCGAATCCTGTCTGGAC
TGCTGTCCCATTGTCTGATTAGCTGGGCCTAGCATAGTTGAAATTGAATG
ACTTCCAATGGAATTGCCCTCCTTCTCACCTTCTTCCCGCACATACCCAT
TTTTTTCTATTTGCCCCCTGTCCCTACTGACTATTGACCCCACGTAAATT
AC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATCGCCCCCGCAGCATTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTA
AACACATGAAACTCAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_h18.b1 MSMg01no148_h18.b1 CHROMAT_FILE:
MSMg01no148_h18.b1 PHD_FILE: MSMg01no148_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:24 2005
         (230 letters)



>mm_chr11_22541450_22542079
          Length = 630

 Score =  340 bits (176), Expect = 3e-98
 Identities = 194/200 (97%)
 Strand = Plus / Plus

                                                                       
Query: 29  accactattacacccgtatgttcttcttgcctagctggttggtattactgcacacagggt 88
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 accactattacaccagtatgttcttcttgcctagctggttggtattactgcacacagggt 288

                                                                       
Query: 89  caacctgcagctctgcagctggagagatcatagatcctagtggagaagttactgcttttg 148
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 caacctgcagctctgcagttggagagatcatagatcctagtggagaagttactgcttttg 348

                                                                       
Query: 149 tgctgccaaatgaatatgatgtgtttgtcttcgttagggttttactgctgtgaacagaca 208
           ||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 349 tgctgtcaaatggatatgatgtgcctgtcttcgttagggttttactgctgtgaacagaca 408

                               
Query: 209 ccatgaccaaggcaactctt 228
           ||||||||||||||||||||
Sbjct: 409 ccatgaccaaggcaactctt 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)