BAC Information

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BAC

Clone NameMSMg01-148I11
Chromosome11 (Build37)
Map Location 7,203,175 - 7,203,413
singlet/doubletsinglet
Overlap genenone
Upstream geneOgdh, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148I11.T7 (MSMg01no148_i11.b1)MSMg01-148I11.TJ (MSMg01no148_i11.g1)
ACCAG351496AG351497
length724718
length of high quality
(start - end)
242 (71 - 312)346 (74 - 419)
definitionCHROMAT_FILE: MSMg01no148_i11.b1 PHD_FILE: MSMg01no148_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:27 2005CHROMAT_FILE: MSMg01no148_i11.g1 PHD_FILE: MSMg01no148_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATCCGCG
GAATTCCTTGTGGTTACACGACATGCTTGGGGTATTTAAATCCTTTTGAA
TGTACTAGGGCTCATTTCATGGCCCCACACATAGCCCATTGTTCTTGAGA
AGACTGTGTTCTGTTGTAATCTGAAGTGTTTGAAAAGCCCCTAGGTCTAT
GGCACAGCACACAGTGTCTCTGTTTACTTGTTGATATTAGGACTTGTTCT
CACATTAGTGAGATCTCAGTGTTGATGTGTTACACCACCCCCCCCCCCTT
GCAGCCCCCACTGTCCATGCTGTTCTGTGCTGCCCCTGCTGGGCGGTTAA
GTTTCTTCACCTGACATGTCAGCCTCTGCTTCCTGAGCTCAGGGACTTTG
TGCTGAGGAGTGCATATGCCCCACGCACTTCACCTGGGGATGACCAGCAC
TTACACTGCTGGAAATGTTCTTCGTTATTCCTAGTAAGTGTTTTTCGTCT
CATTGCCTGCTTAGCATTGTAGCTATGGCCTGCCTGTTGACAACTGCTTA
CACCAGTCATCTTCTTTCTAGTCTTTTCATTTTAATAACATTCGTGTCCT
TCTCTATCCCCCATGTCTTGATAGTATTTCTGCTGTTACAACTCCTGTAT
CTGCTTCAATTTTCAACACCCTATGAAATTCCGAAGGAAGACCAACCGCG
TGTTTATTTCTTTCCTCCCCACAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCCTTGAATTTGATTATTTCCTGCCA
TCTACTACTCTTAGGTGTGTTTGCTTCTTATTGTTCTAGAACTTTCAAGT
GTCTTGTTAAGTCTCTAGCATGAGATTTCAATAAGTTTTGTTTATGAAGG
CACTTGGTGCTATGACCTTTCCTCTTAGCACTGCTTTCATTGTGTCCTGT
AAGTTTAGGTGTGTTGTACATTCATTTTCACTGAATTCTAGACAGTCTTT
AGTTTCTTCCTTTATTTTTTTTCTTGCCCCTCAGGGTCATTGAGTAGAGA
TTTTCAGTTTCCATGAGCTTTAGGCTTTCCTCTGTTTCTGTTGTTGTTGA
AGTCCAGTTTTAATCCCCCCCTGTTCTGGTAAGATGCATAAGATTACTTC
AATATAATCACTTCTTGTATCTGTTGATGCTTTCTTTGTGACTCCACATA
TGGCCAGTTTTAGAGAAGCTTTGTTGAGGCGCTGATGAGGTATCTTTGCT
TGCGCCTGGGCGAAATGCTCTTTAGGTATCTGTTTGGCCCATTTGAGCCA
TAATATCTGTCATTTCCATCATGTCTCTGCTCAGTTCCCGCCTTCATCAT
CTATCCACTGGTGAAAGTATGATGTTGATATCTCCCACTATTACTGTGTG
GCGTTTTGATGTTTGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_i11.b1 MSMg01no148_i11.b1 CHROMAT_FILE:
MSMg01no148_i11.b1 PHD_FILE: MSMg01no148_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:27 2005
         (242 letters)



>mm_chr11_7202975_7203613
          Length = 639

 Score =  453 bits (234), Expect = e-132
 Identities = 239/242 (98%), Gaps = 3/242 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgcttggggtatttaaatccttttgaatgtactagggctcatttcatggccccacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgcttggggtatttaaatccttttgaatgtactagggctcatttcatggccccacac 260

                                                                       
Query: 61  atagcccattgttcttgagaagactgtgttctgttgtaatctgaagtgtttgaaaagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagcccattgttcttgagaagactgtgttctgttgtaatctgaagtgtttgaaaagccc 320

                                                                       
Query: 121 ctaggtctatggcacagcacacagtgtctctgtttacttgttgatattaggacttgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggtctatggcacagcacacagtgtctctgtttacttgttgatattaggacttgttct 380

                                                                       
Query: 181 cacattagtgagatctcagtgttgatgtgttacaccacccccccccccttgcagccccca 240
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 381 cacattagtgagatctcagtgttgatgtgttacaccacccccccc---ttgcagccccca 437

             
Query: 241 ct 242
           ||
Sbjct: 438 ct 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 639
Length adjustment: 9
Effective length of query: 233
Effective length of database: 630
Effective search space:   146790
Effective search space used:   146790
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)