Query= MSMg01no148_m15.b1 MSMg01no148_m15.b1 CHROMAT_FILE:
MSMg01no148_m15.b1 PHD_FILE: MSMg01no148_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:48 2005
(370 letters)
>mm_chr11_18997042_18997811
Length = 770
Score = 615 bits (318), Expect = e-180
Identities = 354/366 (96%)
Strand = Plus / Minus
Query: 4 gaattcatccaagtttacatgactgtgactatgtgtaaggaatcccaattaaaacctgga 63
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattcatccaagctcagatgactgtgactatgtgtaaggaatcccaattaaaacctgga 510
Query: 64 gaaataacaatactgcttccaaaacagtgtccccaagacatctaagcatgatgtgatatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaaataacaatactgcttccaaaacagtgtccccaagacatctaagcatgatgtgatatg 450
Query: 124 agaaacccgtctttctgtggaaaggcatctattcttcgtactgtttacttgggaggcgtc 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agaaacccgtctttctgtggagaggcatctattcttcgtactgtttacttgggaggcgtc 390
Query: 184 ctgccctccctccatgagactgtagtaatattgtagtcagggaccttcacttactttcac 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 389 ctgccctccctccatgagactgtagtaatattgtagtcaggaaccttcacttactttcac 330
Query: 244 cagacaagctttggtatgcagtttgtacggattattcatgtagagttctttggcatgaag 303
| |||||||||||||||| |||||| || ||||| ||| |||||||||||||||||||||
Sbjct: 329 cggacaagctttggtatggagtttgcacagattaatcaggtagagttctttggcatgaag 270
Query: 304 ctatatggttagtccagtgatacacgtgtgaaatagcatgggccttgaagactctacgct 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctatatggttagtccagtgatagacgtgtgaaatagcatgggccttgaagactctacgct 210
Query: 364 ggagct 369
||||||
Sbjct: 209 ggagct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_m15.g1 MSMg01no148_m15.g1 CHROMAT_FILE:
MSMg01no148_m15.g1 PHD_FILE: MSMg01no148_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:48 2005
(529 letters)
>mm_chr11_18851012_18851943
Length = 932
Score = 905 bits (468), Expect = 0.0
Identities = 515/536 (96%), Gaps = 11/536 (2%)
Strand = Plus / Plus
Query: 1 tttctttggcatagataacacgttcaattaagcatctatcacttcatgattctctactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctttggcatagataacacgttcaattaagcatctatcacttcatgattctctactgt 260
Query: 61 caacacaaataatgtataaaatgtaatggggtgggaaatgtggagagaaaccaaccaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacacaaataatgtataaaatgtaatggggtgggaaatgtggagagaaaccaaccaagt 320
Query: 121 aactaagatccaggatgaaaatgtttatgaactttggtgaaacacacagacacaaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactaagatccaggatgaaaatgtttatgaactttggtgaaacacacagacacaaaaaca 380
Query: 181 ttccaaacccttaaagtgcatttggtggaattaaacacagttttgtaaagcccctacagg 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttccaaacccttaaagtgcatttggtggaattaaacacagttttgtagagcccctacagg 440
Query: 241 acagatgcatttt----ctgtccagttatgagctcacattggtaccgaacttttacccaa 296
| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagatgca----aacactgtccagttatgagctcacattggtaccgaacttttacccaa 496
Query: 297 gattaagtcagaatgacaaatatttctatgggttagagttcactgaaccccgggactgtg 356
|||||||||||||||||||||||||||||||||||| |||||||||| | || ||||||
Sbjct: 497 gattaagtcagaatgacaaatatttctatgggttagtgttcactgaagtcaggtactgtg 556
Query: 357 gacagatgtaacataaacttagaaatcaaacagcttttcagtgcccccccc---actctc 413
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 557 gacagacgtaacataaacttagaaatcaagcagcttttcagtgcccccccccccactctc 616
Query: 414 ttgaatcactgtatttggttcttttaagcaagaatatttttttctttttaagacaccaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 617 ttgaatcactgtatttggttcttttaagcaagaatatttttttctttttaagaaaccaaa 676
Query: 474 tatggtattttaactttattctccctttaggggagctgcatcaaattatttgttta 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatggtattttaactttattctccctttaggggagctgcatcaaattatttgttta 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 932
Length adjustment: 10
Effective length of query: 519
Effective length of database: 922
Effective search space: 478518
Effective search space used: 478518
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
