BAC Information

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BAC

Clone NameMSMg01-148N04
Chromosome11 (Build37)
Map Location 89,565,374 - 89,703,187
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148N04.T7 (MSMg01no148_n04.b1)MSMg01-148N04.TJ (MSMg01no148_n04.g1)
ACCAG351711AG351712
length713708
length of high quality
(start - end)
620 (50 - 669)564 (69 - 632)
definitionCHROMAT_FILE: MSMg01no148_n04.b1 PHD_FILE: MSMg01no148_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:50 2005CHROMAT_FILE: MSMg01no148_n04.g1 PHD_FILE: MSMg01no148_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,702,568 - 89,703,187)(89,565,374 - 89,565,937)
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATAGGTCCAGAATCCGCGGAAT
TCACCATAGAAGGACTCTCACACCCAGGATAGTAAGTGAAAGGATGGCTT
ACTTACTGATGATATCCACTCTGGTCTTGTGGAGTCCAGAGGGTTTTTTT
TTTCTTTGCTACGTCTTAAAGAGCCCAAGCACCTACCAAAAAGAAGAACT
ATGTTGAACGTCTGCCAATGGCTGCTGACATTCCCTGGCCTCTCTTTCAT
CTCATCAGCTTGAATTTCAAACCCTTTGAATATCTTCCAACCTGTAACTT
AAACACCAGCACACAGAGGAGAAACATTTCACTGGGGTTTGGATGAAAAA
TGCATGAATTGGTAGAAATGGATAGTAAAAGTTTTAATACATTGCTCTTA
GCCTACAGAACCCAATACCTCCCTTAATAGCTTAATGTTCTTCACTGCTC
TTGCATGCACACAAACAAAATTGAAGACCAGGACTTTAGTAAAGGAGAGG
GTTCTGGCAGAAGCTTTTCAAGGCAGGCATTGGGCTAGCATAACACCAGC
CAGAGGGCCTTCTTACTATCTCAGTTATCAGTGGCCTGCTATCCATTTTG
AATGAAGGCCACCCAGCCTTGCTGAACACCGGCCAGCAAGGCAGGAAGGC
ACAGAGCTTCACGAAGCTTCAGAGCCCACCTGTGATGACTTATGGCAAAT
GAAAATCTTAAGG
GATGCTAGGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATACTCAGGATGGAGGACAGATATTGGAGAG
AACACAGATGAGATGATCCCCAGGTAAGAAATGGCACATGGAAGTTAAAC
AGCCTTTGCTTACCCACAAGAATGAGATGCAACTGCTAAAATTTAGACAC
CACTTAGTTCACTAGGAACTAAGACCTCCATGTCAGAAAATAGAAGTTGT
ATGGAATCACAATGACTAGACCTTAAAGAAGGGAGAGTTGCAGAGGCAGG
ACCATCTATCTTCAATGTCAGAACTCTCCAGGGAATGAATTTCATTCTGG
AAGTCTGTTTATGGTTAGTTGACTCAGGGAAAACACTAGAAAGCCCTTGT
GTGATGTCCCATAACCTCATTATTAGAATACTAAGGTCACATGCTTCCAA
GGCATTTCTGTCAACCAGAATTGACCTTTACTGAGTCAATTTGGCACATA
GTAAACCTTGACATAAGCTAGAGAGTCACCCTTAAGGGGACTTGTCATCT
TCATCCAGCCTGTGAAAGATCAGAACAGCGTCTGGGTGGCTTGGTATTTG
AGTCCCATGAAATTGTCTAGACCACAAAGTCTAGACCCACAGTCTAGACC
CAGCACAGCCCAGTTTTAAATAGTGAGATCTTATTATACATAGGGCAGCA
GGTTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_n04.b1 MSMg01no148_n04.b1 CHROMAT_FILE:
MSMg01no148_n04.b1 PHD_FILE: MSMg01no148_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:50 2005
         (620 letters)



>mm_chr11_89702368_89703387
          Length = 1020

 Score = 1191 bits (616), Expect = 0.0
 Identities = 619/620 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaccatagaaggactctcacacccaggatagtaagtgaaaggatggcttacttactga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ttcaccatagaaggaatctcacacccaggatagtaagtgaaaggatggcttacttactga 761

                                                                       
Query: 61  tgatatccactctggtcttgtggagtccagagggttttttttttctttgctacgtcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tgatatccactctggtcttgtggagtccagagggttttttttttctttgctacgtcttaa 701

                                                                       
Query: 121 agagcccaagcacctaccaaaaagaagaactatgttgaacgtctgccaatggctgctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agagcccaagcacctaccaaaaagaagaactatgttgaacgtctgccaatggctgctgac 641

                                                                       
Query: 181 attccctggcctctctttcatctcatcagcttgaatttcaaaccctttgaatatcttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 attccctggcctctctttcatctcatcagcttgaatttcaaaccctttgaatatcttcca 581

                                                                       
Query: 241 acctgtaacttaaacaccagcacacagaggagaaacatttcactggggtttggatgaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acctgtaacttaaacaccagcacacagaggagaaacatttcactggggtttggatgaaaa 521

                                                                       
Query: 301 atgcatgaattggtagaaatggatagtaaaagttttaatacattgctcttagcctacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atgcatgaattggtagaaatggatagtaaaagttttaatacattgctcttagcctacaga 461

                                                                       
Query: 361 acccaatacctcccttaatagcttaatgttcttcactgctcttgcatgcacacaaacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acccaatacctcccttaatagcttaatgttcttcactgctcttgcatgcacacaaacaaa 401

                                                                       
Query: 421 attgaagaccaggactttagtaaaggagagggttctggcagaagcttttcaaggcaggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 attgaagaccaggactttagtaaaggagagggttctggcagaagcttttcaaggcaggca 341

                                                                       
Query: 481 ttgggctagcataacaccagccagagggccttcttactatctcagttatcagtggcctgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttgggctagcataacaccagccagagggccttcttactatctcagttatcagtggcctgc 281

                                                                       
Query: 541 tatccattttgaatgaaggccacccagccttgctgaacaccggccagcaaggcaggaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tatccattttgaatgaaggccacccagccttgctgaacaccggccagcaaggcaggaagg 221

                               
Query: 601 cacagagcttcacgaagctt 620
           ||||||||||||||||||||
Sbjct: 220 cacagagcttcacgaagctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no148_n04.g1 MSMg01no148_n04.g1 CHROMAT_FILE:
MSMg01no148_n04.g1 PHD_FILE: MSMg01no148_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:51 2005
         (564 letters)



>mm_chr11_89565174_89566137
          Length = 964

 Score = 1083 bits (560), Expect = 0.0
 Identities = 563/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catactcaggatggaggacagatattggagagaacacagatgagatgatccccaggtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactcaggatggaggacagatattggagagaacacagatgagatgatccccaggtaag 260

                                                                       
Query: 61  aaatggcacatggaagttaaacagcctttgcttacccacaagaatgagatgcaactgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatggcacatggaagttaaacagcctttgcttacccacaagaatgagatgcaactgcta 320

                                                                       
Query: 121 aaatttagacaccacttagttcactaggaactaagacctccatgtcagaaaatagaagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatttagacaccacttagttcactaggaactaagacctccatgtcagaaaatagaagtt 380

                                                                       
Query: 181 gtatggaatcacaatgactagaccttaaagaagggagagttgcagaggcaggaccatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatggaatcacaatgactagaccttaaagaagggagagttgcagaggcaggaccatcta 440

                                                                       
Query: 241 tcttcaatgtcagaactctccagggaatgaatttcattctggaagtctgtttatggttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttcaatgtcagaactctccagggaatgaatttcattctggaagtctgtttatggttag 500

                                                                       
Query: 301 ttgactcagggaaaacactagaaagcccttgtgtgatgtcccataacctcattattagaa 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ttgactcagggaaaacactagaaagcccttgtgtgatgtcccataagctcattattagaa 560

                                                                       
Query: 361 tactaaggtcacatgcttccaaggcatttctgtcaaccagaattgacctttactgagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactaaggtcacatgcttccaaggcatttctgtcaaccagaattgacctttactgagtca 620

                                                                       
Query: 421 atttggcacatagtaaaccttgacataagctagagagtcacccttaaggggacttgtcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttggcacatagtaaaccttgacataagctagagagtcacccttaaggggacttgtcat 680

                                                                       
Query: 481 cttcatccagcctgtgaaagatcagaacagcgtctgggtggcttggtatttgagtcccat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcatccagcctgtgaaagatcagaacagcgtctgggtggcttggtatttgagtcccat 740

                                   
Query: 541 gaaattgtctagaccacaaagtct 564
           ||||||||||||||||||||||||
Sbjct: 741 gaaattgtctagaccacaaagtct 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)