Query= MSMg01no149_g10.b1 MSMg01no149_g10.b1 CHROMAT_FILE:
MSMg01no149_g10.b1 PHD_FILE: MSMg01no149_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:39 2005
(474 letters)
>mm_chr11_52899162_52900035
Length = 874
Score = 839 bits (434), Expect = 0.0
Identities = 461/470 (98%)
Strand = Plus / Minus
Query: 5 gaattcacctagatgcctttagcatcagctattaatgctgggttattacctgaaattaat 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaattcacctagacgggtttagcatcagctattaatgctgggttattacctgaaattaat 522
Query: 65 gatgtggctttcagaagccagctctgctgcatgctgtgaacccactgcggcactcgggct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gatgtggctttcagaagccagctctgctgcatgctgtgaacccactgcggcactcgggct 462
Query: 125 tctgagttgtgatgtctctgcactgcgaactggcacagtgccctgaccacatggcagatg 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 461 tctgagttgtgatgtctctgcactgcgaactggcacagtgctctgaccacatggcagatg 402
Query: 185 tccatcctgggtgggcttccccaccttgagccctggaccatttccctcagtaggtaattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tccatcctgggtgggcttccccaccttgagccctggaccatttccctcagtaggtaattt 342
Query: 245 gtagatatagggacaggcacgggcttaccatgtcaccgctgtcgtctcagggctaagccc 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 341 gtagatatagggacaggcacgggcttaccatgtcaccgctgttgtctcagggctaagccc 282
Query: 305 tgagcttgcctggagcagcttcttggcatgcagggctacatgagagcaaatgtcaccaat 364
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct: 281 tgagcttgcctggagcagcttcttggcatgcagggctacacgacagcaaatgtcaccgat 222
Query: 365 tgcttccattcagggcatgtgttgtttacttttctcatggctgtgaccaaacactgggca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgcttccattcagggcatgtgttgtttacttttctcatggctgtgaccaaacactgggca 162
Query: 425 gaaaacaacttcagggagcggagacctcttcctgctcacagtctgaaggg 474
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 161 gaaaacaacttcagggagcagagacctcttcctgctcacagtctgaaggg 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_g10.g1 MSMg01no149_g10.g1 CHROMAT_FILE:
MSMg01no149_g10.g1 PHD_FILE: MSMg01no149_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:39 2005
(503 letters)
>mm_chr11_52754751_52755653
Length = 903
Score = 876 bits (453), Expect = 0.0
Identities = 490/515 (95%), Gaps = 22/515 (4%)
Strand = Plus / Plus
Query: 1 atacatttgccaatacttaaaagccctgcagcaaaaatgaattacgcagtgatgctgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atacatttgccaatacttaaaagccctgcagcaaaaatgaattacgcagtgatgctgggg 258
Query: 61 aagagaga-tcaaacagcattcagtgggaaagccagcatctcagaagcacgcagctgtcc 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagagagattcaaacagcattcagtgggaaagccagcatctcagaagcacgcagctgtcc 318
Query: 120 ttatgggctttgaaaggctagaaagaaagctgacttggggcaggggtcactgaacccctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttatgggctttgaaaggctagaaagaaagctgacttggggcaggggtcactgaacccctg 378
Query: 180 ggctccccctggcatgcggctggatgtcctctcaggtactctcaatccctcaaggcttcc 239
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 ggctccccctggcatgcggctggatgtc----------ctctcaatccctcaaggcttcc 428
Query: 240 agttgctttactgtctcatggcccagggttccggttcctgatctacttcataggccattg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agttgctttactgtctcatggcccagggttccggttcctgatctacttcataggccattg 488
Query: 300 cttgtgccttctgtctaagact-----------gttacacgtagtcttgctgactctgtt 348
|||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 489 cttgtgccttctgtctaagactgttcggtcaaggttacatgtagtcttgctgactctgtt 548
Query: 349 gccccaaatgtcataccagcctttccccaagtcttttaaggtgcctctatacccagttcc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gccccaaatgtcataccagcctttccccaagtcttttaaggtgcctctatacccagttcc 608
Query: 409 acagactctacttttgtgcttgtataaagatgccctcctagtctcaccctgcgaccccac 468
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 609 acagactctacttttgtgcttgtataaagatgccctcctagtctctccctgcaaccccac 668
Query: 469 cacatgaccctcagggcaccaggcccagcctgcta 503
|||||||||||||||||||||||||||||||||||
Sbjct: 669 cacatgaccctcagggcaccaggcccagcctgcta 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
