BAC Information

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BAC

Clone NameMSMg01-150E11
Chromosome11 (Build37)
Map Location 6,664,653 - 6,664,820
singlet/doubletsinglet
Overlap genenone
Upstream gene2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419
Downstream geneLOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150E11.T7 (MSMg01no150_e11.b1)MSMg01-150E11.TJ (MSMg01no150_e11.g1)
ACCAG352762AG352763
length828792
length of high quality
(start - end)
112 (70 - 181)168 (78 - 245)
definitionCHROMAT_FILE: MSMg01no150_e11.b1 PHD_FILE: MSMg01no150_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:47 2005CHROMAT_FILE: MSMg01no150_e11.g1 PHD_FILE: MSMg01no150_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCACAACATCCGCGGAATTC
TAGCTTCTCACAGCACAGGAACCGGCAGACAGGTTGAGCTCACCCTGTGG
CCGGCAGAAGGCCAGGCTCAACTCCGCCATCTTGCTTCAGCTTATGTTTG
TGTGTGTGAGCGTGTGTATATGTATGTGCATGCATGTGAGTGTGTACAAG
TATATATGAGTGCATACAAGTGTTTGTGTATGTGACTGTGTGTATGTATG
TCTCCCTCCCCTTGCAACTTTTTCCCCCCCCCCTCCTCCTTTCCCCCTCC
CCCCCCTCCCCTTTTTTTTTTTCTCCCCCCCTCCCCCCTTCCCCCTTTTT
CCTTTTTTTTCCCCTCCCTTCCTCTCCCCCCCCCCTTCCCCCCCCCCTCC
TCCCCCCCTTCCCCCCTTTTTTCCCAAACATTCCTTCCCCCCCTTTCCCC
TCCCTCTCTTTCCCTTTTTCCCTCCCCCTTCCCCCCCTTATCTCCCCCCC
CCTTCCCCCCTTTTTTTCTTTCTCTGTTACCCCCCTTCTTTTCCCCCCTC
TCCCCCCCCATTCCTCCCTCCCCCTCCCCTCCTCCCCTCCCTTTCCCTCT
TTTTTCCCCTTCCCTTCTTTCCCCCTCCTTCCCCCTCTTTTTCTTTTTTC
CCCTCTCCCCCCCCCTCCTTTTCCCCCTCCCTCCCCCCTCCCTATCACCC
CCCCCCTCTTTTTTTTCCGCCCCCCCTCTCCCCCCCTTTTTCCTCCCCTT
TTTTTTTCTCTCCCCCCCCTTTCCCTTTTCCCCTTCCTCCTCCCCTCTTC
TTTCCCCTCCTCCCCCCCCCCCCTCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGGCTCCTTGGCCACCACAC
CCATGGAGGCAGGGCACCTGGCCCCATTCAGTGTCAAGTTATTACTTCCC
TTTGGAAGGTCTGCACGTTCCTAGCATGCTATTTCCCTGACAGAGTGATT
AGCAGTGAGTTGAAGGATCTCTCTCCCTCTCCCCCTCCCCCTCCCNNNNN
NTNTCNNCTCCCCCCCCCCCCTCCCCCCCCCCCCCTCCCCCCCCTTTCCC
CCCCCCCTTACCCCCCTTTTTTTTTTCCNNTNCCCCTCCTTCTCCTTCTC
CCTCCTCCCTCCTTTCTCCCCCCCTTCTCCCCCTCCTCCCTTCCCCCACT
CCCACCACCAATCTTTTTTTGTCCCCCCCCCCCCCCTCCCCGATAATTCT
ATTTCTACCTCCCACTCCCCCCCTCCTTCCCGCCCCCCCCCTTCTTTTTC
CCTATTCTCTCCCCCCCCCCTTATCCTCAATTTTCTCACTATTACCCCCC
TCCTCCTCCCCCCCTTCCTTTTTCCCCTCCCCTCTCTTTTTCTCCAACTA
GTCCACCTTAATCCCCCCCCCCTCTCCATTTTTCCCCCTTTTCCGCCCCC
TTCTCTCTCCTTCTCTTCCTTTTCCCCTCTCTTTTCTCCTCTCTGCCCCC
CCGCTTTTCTTTCCCCCTTCCTTTCCCTACCTCCCCCCTATCCATTTTCT
ATCTTTTCTTTCTCCCTTCTTCCTCCCCCCTCCACCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_e11.g1 MSMg01no150_e11.g1 CHROMAT_FILE:
MSMg01no150_e11.g1 PHD_FILE: MSMg01no150_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:48 2005
         (168 letters)



>mm_chr11_6664481_6665048
          Length = 568

 Score =  325 bits (168), Expect = 9e-94
 Identities = 168/168 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaggctccttggccaccacacccatggaggcagggcacctggccccattcagtgtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctaggctccttggccaccacacccatggaggcagggcacctggccccattcagtgtcaa 281

                                                                       
Query: 61  gttattacttccctttggaaggtctgcacgttcctagcatgctatttccctgacagagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gttattacttccctttggaaggtctgcacgttcctagcatgctatttccctgacagagtg 221

                                                           
Query: 121 attagcagtgagttgaaggatctctctccctctccccctccccctccc 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 attagcagtgagttgaaggatctctctccctctccccctccccctccc 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)