BAC Information

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BAC

Clone NameMSMg01-150F11
Chromosome11 (Build37)
Map Location 53,289,382 - 53,465,317
singlet/doubletdoublet
Overlap geneAnkrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50
Upstream geneLOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427
Downstream geneIl5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150F11.T7 (MSMg01no150_f11.b1)MSMg01-150F11.TJ (MSMg01no150_f11.g1)
ACCAG352808AG352809
length720743
length of high quality
(start - end)
390 (331 - 720)269 (79 - 347)
definitionCHROMAT_FILE: MSMg01no150_f11.b1 PHD_FILE: MSMg01no150_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:52 2005CHROMAT_FILE: MSMg01no150_f11.g1 PHD_FILE: MSMg01no150_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,464,928 - 53,465,317)(53,289,382 - 53,289,646)
sequence
AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGGCTATGTCTAAAAACAAACAAACAAACACAAAAACTCCAA
ACCAAAAAGAATTCAGTTGAGGCCAGGCTCTGCACTTTGCTTTTCAATAG
TAGTTCTCCAGATTCTCTTGAAAAAGAACTCGTGCCCGACAGTGGTGGCG
CACACCTTTGATCCCAGCACTTGGGAGAGGAGGCAGGTGGATTTCTGAGT
TGGAGGACAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGGTACA
CAGAGAAAAACGCTATCTTGAATATATTTACAAAACAGAACTCATGAGGC
TGGAGGGGTGGCCAGTGGTTAAGAACACTGGCTGCTCTTCCAGAGGACTT
GTGTTCAACACACACATGGCAGCTCACAACTCCAGCTCAGAGGATCTGAC
ATCCTCACACAGATACATATGCAGTTAGAACACCAGTGCTTATCAAATAG
AAGGAGCTGGAGTATTGAGACACAGCCATATCTTGCCTCTCCCCAAGTGT
GCATAGGGCAAGTGAGGGCGAGGCGTTCTGGGCTGTCTGTATTTCCTGTG
AATCCTTCATGTCAAGCACAGGGGTGCCTTTGCCCTGGGCCAGATACTTA
GAGCTGATATGGAAAAAGAGTACTGGTGATTAGACGGTGCCCAGGCTAAA
TTGTAGTCATGTGACCCCAT
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGGCAGAGGAAGCAGAAAGAG
TGGGATTGAGGCTTGCATTTATCCGTAGTTCACGGCTATAATGCCTGTGT
GGTTGATTCCTTTCCTTTGCAAAGAAATCCGAACTCTTTGAATATAGAAT
GCTTGAGTGGGGCGGTGGGAATATAAAGAGGACATTCCATAGATAAAACA
GGAGCAGGATGTAGCTAGTGGGTGATTTTGTCCAATATGGGAGACACCCT
GGATTCACTCTTTATTTAGCCCTGGGGAGGGGTGGGGAGGAAGNNNNNNN
NNNNTNTGNNNNNNNNNNNNNNNNCNTTNNNNNNNNNNNNNNNNGNNTNN
TTGTTGNNNNTNTTTGTGTGCCCCGTGTGCTCGTTTTCCTGCTCGCCTTC
CTTTTGCCTCTGATCCCCCCTCTCCCCTTGCGTGGTTCTGGNCCGTTCTT
TCTGCGCTCCCTTTGGCCGTGGCTCCTTTTTTCCGTTTTTTTTGACCCCC
TTTTCTTGCTCTCCTGATTTTTTTTTTTGGCGGCTCCCCGTTGTCTCTTT
GGTTTCTTTGTTCCCTTTCGCCTCTTTGCTGTCTCCTTTTCGTCGCCTTG
TCTCTCTTTTTTTTTTCCGCGGTCTTCCTTCCTCTCGTGCCCGCGTGTTT
TGTGGCCGCGTCTTGCACCCTTCTTACCCGCCCCCGCGCCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_f11.b1 MSMg01no150_f11.b1 CHROMAT_FILE:
MSMg01no150_f11.b1 PHD_FILE: MSMg01no150_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:52 2005
         (390 letters)



>mm_chr11_53464602_53465391
          Length = 790

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaacagaactcatgaggctggaggggtggccagtggttaagaacactggctgctcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 caaaacagaactcatgaggctggaggggtggccagtggttaagaacactggctgctcttc 657

                                                                       
Query: 61  cagaggacttgtgttcaacacacacatggcagctcacaactccagctcagaggatctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cagaggacttgtgttcaacacacacatggcagctcacaactccagctcagaggatctgac 597

                                                                       
Query: 121 atcctcacacagatacatatgcagttagaacaccagtgcttatcaaatagaaggagctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atcctcacacagatacatatgcagttagaacaccagtgcttatcaaatagaaggagctgg 537

                                                                       
Query: 181 agtattgagacacagccatatcttgcctctccccaagtgtgcatagggcaagtgagggcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtattgagacacagccatatcttgcctctccccaagtgtgcatagggcaagtgagggcg 477

                                                                       
Query: 241 aggcgttctgggctgtctgtatttcctgtgaatccttcatgtcaagcacaggggtgcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aggcgttctgggctgtctgtatttcctgtgaatccttcatgtcaagcacaggggtgcctt 417

                                                                       
Query: 301 tgccctgggccagatacttagagctgatatggaaaaagagtactggtgattagacggtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgccctgggccagatacttagagctgatatggaaaaagagtactggtgattagacggtgc 357

                                         
Query: 361 ccaggctaaattgtagtcatgtgaccccat 390
           ||||||||||||||||||||||||||||||
Sbjct: 356 ccaggctaaattgtagtcatgtgaccccat 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no150_f11.g1 MSMg01no150_f11.g1 CHROMAT_FILE:
MSMg01no150_f11.g1 PHD_FILE: MSMg01no150_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:52 2005
         (269 letters)



>mm_chr11_53289182_53289850
          Length = 669

 Score =  505 bits (261), Expect = e-147
 Identities = 264/265 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccggcagaggaagcagaaagagtgggattgaggcttgcatttatccgtagttcacggcta 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ccggcagaggaagcagaaagagtgggattggggcttgcatttatccgtagttcacggcta 260

                                                                       
Query: 61  taatgcctgtgtggttgattcctttcctttgcaaagaaatccgaactctttgaatataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgcctgtgtggttgattcctttcctttgcaaagaaatccgaactctttgaatataga 320

                                                                       
Query: 121 atgcttgagtggggcggtgggaatataaagaggacattccatagataaaacaggagcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcttgagtggggcggtgggaatataaagaggacattccatagataaaacaggagcagg 380

                                                                       
Query: 181 atgtagctagtgggtgattttgtccaatatgggagacaccctggattcactctttattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtagctagtgggtgattttgtccaatatgggagacaccctggattcactctttattta 440

                                    
Query: 241 gccctggggaggggtggggaggaag 265
           |||||||||||||||||||||||||
Sbjct: 441 gccctggggaggggtggggaggaag 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)