BAC Information

Click to search

BAC

Clone NameMSMg01-150G23
Chromosome11 (Build37)
Map Location 99,252,842 - 99,253,312
singlet/doubletsinglet
Overlap genenone
Upstream genePerld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10
Downstream geneA830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150G23.T7 (MSMg01no150_g23.b1)MSMg01-150G23.TJ (MSMg01no150_g23.g1)
ACCAG352878AG352879
length744748
length of high quality
(start - end)		471 (33 - 503)362 (77 - 438)
definitionCHROMAT_FILE: MSMg01no150_g23.b1 PHD_FILE: MSMg01no150_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:59 2005CHROMAT_FILE: MSMg01no150_g23.g1 PHD_FILE: MSMg01no150_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCCAGT
GTCCTCATCAACGTCAGTTCAATGTCATGGAAAACTATCATCTCTGTCGC
TATAGCAAAACCAGACTCTAGCACAACCAGTTCTGCGCCTCTGGGATAAT
TTCTATAAATTTCTAAGGTTTAGTGTTTTCCAGCTATAAAATTAGGCAAA
TAATACCTATTCTTAGAGAACTGGGGGGAGACTGAAAGTAAGCCATCTGA
AGACCACACATGGGAGGGAAATGTGGGCTCCACCCAGCCTCACACTCCTT
TGCCATTCATGAACCACTTAAGTTGCGGGTCTTAGCCTTTCCATTCTGTC
AGACTGCAATGACTTGGAGAGCTCCTTAAGGAATGCCATCCCCATCTGGA
CGTCTCACGACTTATACAGACACACAGCCAACTCTAAGAGCAGAGGGATT
AGGAGGTTGGTTATGACAACCACATGCGAGAGATGCCAGGGCTCACGTCA
GACATTCTCATTGGCATCTCTGTGATCCCGCTCATGCCAAAGACTCGATT
CAGGTGCTGAGTGCCCAAAAAGACAAAGGTTTGTTCCGTGAAATGCTGGA
TATCCCTTCCTACTATTTTTAGCCCCACCCTTTTTGTACCCCGCCGTTTT
CCTCCTTTTTTCCCCCCCTTTTTTTTTTTTCCCCCCCCTTTCCTCTTCCC
TTTCCTCTCCCTCTCCTATCCCCCCTCCCCCCCCCCCTCTCTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGTATGTGCAGAAGGTTTTGA
ATTGAGAGCTAGTGAAGGCAGGGCCATTATCAGTTTTTATCTGTTGAGGA
ATGCCCATGATGGCAAAGGTGGGGAACATATGGTGAATCAACTTTTGAGT
TTTCACCTATTTGGGCTGTAGCCCATATAAAATGTGAGTATGTATCTACG
GTGACAAAAACATATTTCTGTCTACCGAATTGGGGAATATGGGTGACATC
AATTTGCCATAAGGCCTTGGACTTAAGGCCTCAGGGATTGGTGCCCATCA
TCTGTAAAGCTGGGGTAATGAGGGATGCACAAGAGGAGCGTGTCTTTATT
ATCCTCTGGAGTTGAGCACCACGATGTGGGGGAAGTGGCCATGANNCCCC
TTTATACTTGTGTGTCCGCTTGACTCGACCCCACCTGCTTGTTCCCCCCC
ACCCCCCCCATGCCGCCCTTCGTCCTCTTTGACCCCCACTCACCCCCCCC
CCCTTTCCACACCCCCCTTCCTACCATTTTCCCCCCCCTTCCCCCCCCCC
CCCTTCCTTCCCCCTTTCCCCCCCTTTTTCCCTTCCCCCCCTTCCCCCCC
TCTTTCTTCTCCTCCCCCCCTTTTTTTCTCGCCCCTCCCCTAGCCCTCCT
TTTCTCATGTCCACTATCTCTCCTTCCTTCCTCCCCCCCCCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_g23.b1 MSMg01no150_g23.b1 CHROMAT_FILE:
MSMg01no150_g23.b1 PHD_FILE: MSMg01no150_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:59 2005
         (471 letters)



>mm_chr11_99252465_99253330
          Length = 866

 Score =  785 bits (406), Expect = 0.0
 Identities = 454/476 (95%), Gaps = 13/476 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtccagt------gt--cctcatcaacgtcagttcaatgtcatggaaaacta 55
           |||||||||||||||      ||  |||||||||||||||||||||||| ||||||||||
Sbjct: 848 ggaattcagtccagttgatgagtgacctcatcaacgtcagttcaatgtcgtggaaaacta 789

                                                                       
Query: 56  tcatctctgtcgctatagcaaaaccagactctagcacaaccagttctgcgcctctgggat 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tcatctctgtcgctatagcaaaaccagactctagcacaaccagttctgcgcctctgggat 729

                                                                       
Query: 116 aatttctataaatttctaaggtttagtgttttccagctataaaattaggcaaataatacc 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 728 aatttctataaatttctaaggtttagtgttttccagctataaaattaggcacataatacc 669

                                                                       
Query: 176 tattcttagagaactggggggagactgaaagtaagccatctgaagaccacacatgggagg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tattcttagagaactggggggagactgaaagtaagccatctgaagaccacacatgggagg 609

                                                                       
Query: 236 gaaatgtgggctccacccagcctcacactcctttgccattcatgaaccacttaagttgcg 295
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaaatgtgggctccacccagccccacactcctttgccattcatgaaccacttaagttgcg 549

                                                                       
Query: 296 ggtcttagcctttccattctgtcagactgcaatgacttggagagctccttaaggaatgcc 355
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggtcttagcatttcccttctgtcagactgcaatgacttggagagctccttaaggaatgcc 489

                                                                       
Query: 356 atccccatctggacgtctcacgacttatacagacacacagccaactctaagagcagaggg 415
           |||||||||||||||||||| ||||||||||    |||||| |||||| || ||||||||
Sbjct: 488 atccccatctggacgtctcatgacttataca----cacagc-aactctgagggcagaggg 434

                                                                   
Query: 416 attaggaggttggttatgacaaccacatgcgagagatgccagggctcacgtcagac 471
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 433 attaggaggttggttatgacaaccacatgcgagagatgccagggctcatgtcagac 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 866
Length adjustment: 10
Effective length of query: 461
Effective length of database: 856
Effective search space:   394616
Effective search space used:   394616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |