BAC Information

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BAC

Clone NameMSMg01-151K11
Chromosome11 (Build37)
Map Location 70,673,761 - 70,673,874
singlet/doubletsinglet
Overlap geneRabep1
Upstream geneLOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik
Downstream geneLOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151K11.T7 (MSMg01no151_k11.b1)MSMg01-151K11.TJ (MSMg01no151_k11.g1)
ACCAG353756AG353757
length745731
length of high quality
(start - end)
115 (71 - 185)68 (266 - 333)
definitionCHROMAT_FILE: MSMg01no151_k11.b1 PHD_FILE: MSMg01no151_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:31 2005CHROMAT_FILE: MSMg01no151_k11.g1 PHD_FILE: MSMg01no151_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAA
TTCCAGGNCATTCCCAATACCCAGAGAAATCCTGTCTCAAAATTAAAGGA
AAGAAATGTAACAACTTAATGGAATAAATGGTTAAAAGATCTGGCTGGAC
TCCGCAAAGATGCCCAGACAGCAAGTCAACTTGTCGAAAAAGCCGTTTAA
CATTACATGTCATTAACGAACTGCTATTTTTACTATTATGAACACGATAC
AGCAGATTAACATAATTGCGAGAATTTCTCCTTTACTAAACGAGTTACAG
ATCCTGCTCAAAAAGGACATTTTGTTGTGCAATGTATATCATATGTCATG
TCCACAGCATTTTATTTTCTTCCCCCCCCCCCCCGCATAATGAGCACCAG
CAAACTCTTTTTGTACCGACTTCTCTGCTAAAACTGATAGAAGAATCCTC
GCTTCACACCCATTTTTATCCCCCCTTCCCCCACCACATTCCCCCCTTGA
CCCATTTTTCCTCCGATATCCCCTATTCCTCCCTTATCTCCATCCCCTTT
CCCTTTCCCCGTTCCTCTTTTTCTTCCCCTTTTTTTTTTTTCCCCCCCCT
TTCCCCCCCTTCCTCTTTACTCCCCCCTATCTTCCCCTTTCCTATTCCTT
TCACCTTTCCCTCCCTTCCCCCTTTTTCCCCCTTTTTTCCCCCCTTTTCC
CCTTTTTCTTCCCTTTTTTCCACCCCCCCTTTACCTTCCCCTTTG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAGGTCTCTCGTAGGAAGCCATATTGTT
CGGCTTTGCTGTTTACATATGAGCTATTGGCTGTCCTCTGAGAGCAAAGA
CCATATTTATTTGTGTAGTGCTCTTATTGCCTAATTTATGGCAAATGTTC
AACTGTCTGTTGACTGAAAGAATGACTCCATTTGTATCAGGAAAGCACAG
TGACCATAGGCATAGACTCTGGGTTTCTTGCTAGAGCTGTGACTATGAAC
AAATGACTTGACTTTTCTGTTACAAAGTTTCCATAATGGTAAATAGAAAT
ATGGGCACCTGCTTCAAGGTAGCAGTGCTCACTTAGCCCTGAGCTTAATG
CTTACGCACCCACCCCCCCCACAGACAGAATGTGTTTGAGCAGCAATCGC
TGTCCTCAGCCCTGATACATTGCAAGTTCCGAGATTCTTTTCCTCCCTGA
ATTACATCCTCTCGTCCTCGTCTGAATCTTCCCTGACAGACCCTGGCCTG
CTGATCATCCTTCCAGACCGCTCTTATTATTCCTCGTATTTTTGTGCGCG
TCCGTTTTCCCTTTTTCCCCCCTTCCCCTCTCCCCCTCCACATACGCCCC
ATACTAATACCCTCCCTTTCCCCCCCCTCCCTACCCTCCCCCCCCCCCCC
CTTCCCCTTTCCCCCTTCCTTTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_k11.b1 MSMg01no151_k11.b1 CHROMAT_FILE:
MSMg01no151_k11.b1 PHD_FILE: MSMg01no151_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:31 2005
         (115 letters)



>mm_chr11_70673561_70674075
          Length = 515

 Score =  221 bits (114), Expect = 1e-62
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagagaaatcctgtctcaaaattaaaggaaagaaatgtaacaacttaatggaataaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccagagaaatcctgtctcaaaattaaaggaaagaaatgtaacaacttaatggaataaatg 255

                                                                 
Query: 61  gttaaaagatctggctggactccgcaaagatgcccagacagcaagtcaacttgt 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gttaaaagatctggctggactccgcaaagatgcccagacagcaagtcaacttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)