BAC Information

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BAC

Clone NameMSMg01-152G13
Chromosome11 (Build37)
Map Location 45,143,457 - 45,143,809
singlet/doubletsinglet
Overlap genenone
Upstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152G13.T7 (MSMg01no152_g13.b1)MSMg01-152G13.TJ (MSMg01no152_g13.g1)
ACCAG354295AG354296
length670695
length of high quality
(start - end)
353 (41 - 393)37 (61 - 97)
definitionCHROMAT_FILE: MSMg01no152_g13.b1 PHD_FILE: MSMg01no152_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:29 2005CHROMAT_FILE: MSMg01no152_g13.g1 PHD_FILE: MSMg01no152_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCACAGCATCCGCGGAATTCCAAACTTTTTCAATGACTTCTCAAGCCT
AAATCGTAGGAGACCATCTTCACCCTTCACTGTAGCATCTTGAGAAAAGC
CCGGCAGGAAAAGAATTCTGTGGTCAGATGGGTTCAGCTGTATCCTTAAG
TCTGTGCAGATGTTGAGAAGTCCAACAGAAAGTCTGATTGGGTTCTACTC
TGTGTGTAGCATTTCCTACCCAGTGATACTTACTATTGAACTTAAGTAAA
ATTGTCAATAATCTGAGAGACCTGCCTGGGGCATCCATGGTGCGGAGTTA
AACAGAGGAGGACACTACAGGGCCTGAATAGGGTCATCTTAGATGTGGGA
GGAGAAGCAGCTTAGCTTGACTTGATGGTCGAGTTGACAGGCATATGGCA
AAGCAGAAAGTTCTCATGACTCCTTCCAGACTCATAAAACATTCTAGTTA
GTCAAGAACTTCTGATGAGCAAAGGCTTGACTGACAGTATTACTTTGAGA
GCCTTTTTTCCCCTCACCTACCAACACAGGCTGTATGACTAAAATTATCC
CCCCCGCATCCATGTCTTACTTTCATGTCCATGGCCGCAACGCTATTACT
ATTGCCTGCTCTGTTTCTGTCCTTTCGACGCGCAGAAATGACTTAAAAAA
TTATCAATGAACCCCCTCTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACCCCGAACAGAAGTGGGACTGGGGGAGGAGGAAGAGGGGCCT
GAGCTGCAGTGACAAGGGTTAATTGTTGCGACTAATTCAGCTTTTGGAAG
GTACAACTTCATGGAGTGTGCTAGCTGCAGACCACACTTCCCATTTTAAT
TAGCGACACCATAGGGAGAAGATGGGCTTATAACTGAGTAGTTTGCCGAT
CGGTCAACTTCAGCCTGGAAATCAGACTGCTGAGAACCGGACCCTTACTG
ATAGTTTTGACTAGCAGGACCCCCTCTCCATTATCATGGCTGGGGTCAAA
TCACGCCGTCGCCTCTTCTCTACATCTTTCTCTTTACTTGAGGACCAGGA
CGCCCCCCTTCACCCCGTCCATACCCTGTCCTTCCCTGGCCCTCCGTCTA
CCCCACCTTCTGTCCCCGAACGTAAAGCACCCCCTCCCTGTTATCTTTCC
CTCCCCCCTCTCCTTCCCCCAACTGGACCTTATATGCCCACACCCCTCTT
CATCCCCGCCCCAACCATCCGCCCCCCCACACTCGACCCCTCTTCTTCCT
CAACACCGCCCCCCCTCGCCTCCACCCCACTCCATTTCCTCCCCCCCCCC
CCCTTTCTCCTTTCCCCCCTCCCTTCCCCTCCCTTTCCACCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_g13.b1 MSMg01no152_g13.b1 CHROMAT_FILE:
MSMg01no152_g13.b1 PHD_FILE: MSMg01no152_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:29 2005
         (353 letters)



>mm_chr11_45143257_45144009
          Length = 753

 Score =  621 bits (321), Expect = 0.0
 Identities = 345/353 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcaagcctaaatcgtaggagaccatcttcacccttcactgtagcatcttgagaaaagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 553 tctcaagcctaaatcgtaggagaccatcttcacccttcactgtagcattttgagaaaagc 494

                                                                       
Query: 61  ccggcaggaaaagaattctgtggtcagatgggttcagctgtatccttaagtctgtgcaga 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccagcaggaaaagaattctgtggtcagatgggttcagctgtatccttaagtctgtgcaga 434

                                                                       
Query: 121 tgttgagaagtccaacagaaagtctgattgggttctactctgtgtgtagcatttcctacc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttgagaagtccaacagaaaatctgattgggttctactctgtgtgtagcatttcctacc 374

                                                                       
Query: 181 cagtgatacttactattgaacttaagtaaaattgtcaataatctgagagacctgcctggg 240
           |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct: 373 cagtgatacttactatcgagcttaagtaaaattgccaataatctgagagacctgcctggg 314

                                                                       
Query: 241 gcatccatggtgcggagttaaacagaggaggacactacagggcctgaatagggtcatctt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcatccatggtgtggagttaaacagaggaggacactacagggcctgaatagggtcatctt 254

                                                                
Query: 301 agatgtgggaggagaagcagcttagcttgacttgatggtcgagttgacaggca 353
           | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaatgtgggaggagaagcagcttagcttgacttgatggtcgagttgacaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)