BAC Information

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BAC

Clone NameMSMg01-152M22
Chromosome11 (Build37)
Map Location 15,034,623 - 15,034,951
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M22.T7 (MSMg01no152_m22.b1)MSMg01-152M22.TJ (MSMg01no152_m22.g1)
ACCAG354581AG354582
length704709
length of high quality
(start - end)
495 (70 - 564)347 (126 - 472)
definitionCHROMAT_FILE: MSMg01no152_m22.b1 PHD_FILE: MSMg01no152_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:01 2005CHROMAT_FILE: MSMg01no152_m22.g1 PHD_FILE: MSMg01no152_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAACATGTACCCGTCTGGGATTGGAGGTGAGGTGAACCTCTCGAA
AGTCCCAGAGCCCTGTGATGAGGGAGGCTACCTGGACTCAATGTGTATGA
CCTTTGCCGAAATGCACAATAGTGGGGATGTGGAACATGAAGAGTCCACC
CAGTAGTTAGACAGGGCCCAGAGGAGAAGGATGGGAATAACAACACACCT
TGAAAATTTTCAACCCGAAATTGCTCCTGTTTAAAGAAATACAGTGACAA
AATTAGAGCAGATACTGAAGGAATAGCCCATGAATTCCGGGCCCATTTTG
GAATCCATATCACAGGTGGGCATGAAATCCTGACATTATTACTGATACAA
TGTTGTGCTTGCAGACAGGAGCCTAGCAAGGCTGTAGTCTGAGAGTGTCT
ACCAGCAGCTGACTGAGACAAATGCAGATACAGCCAACTGTTCATCTGAG
GTCAGTGACCCTTCAGGAAGAGGTACAGGAAGTATTAAATGAGCTGAAGG
GGGTGGCAACCAAATAAGAAAACAGTGTTAACTAACCCAGACTCCTGGGA
GCTCCCAAAGGCTGATCCGCCAAAATGAAAGAGCCTATAAGGCTGGGGCT
CGAAGCTGCCCCATTTGTATGTAGCACAATACTGCGTTGTCTGTCTTCCG
TGGA
CCATGATAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATACACAAGGCAGGTATAATTTTT
GTCTACACTGACAGCGAACGGAATGGATTTCATCCTCATTCTCAGAGTCA
AAATATCATTACTGTTTAAATATGCATCAAGATATTACGTGAAAGATAAA
ACTACCTGGGAGCTTTTTACCTCTTGCATACCATGCTACTTAAAATAACA
CCAAGCTTATATCCCACAGAAGAAATTAAAACATATCTATTTTGCTTTTC
TTCAGATATCAGAATATCCATATATCTCTTTATATCTCTCTATTAACCTC
TACCTCAAAGACCTTTTTCTTGTCAATATCTCTAAGTTTAAAAGTTATGG
GCAGTTAGAAAATACACCATCTATAGCAATTTTACTCTTCCCAAGTCAAA
TTCTACCAGTGGCCTTTTCTTTAGTTGAAGACAAAAGATAATGTGTGGAG
AGATTGGTCACCAATTTTCCTACTATGAGGGCAGCGCTTTGACTTTCATT
TACACCAATTAACATAGATCTCACCAGTCACATATGTGAGCCTTAGATAT
TTCAGAAATCAACGAGTCTTCCTTATTATTTGCTCCTTTTCTGCCCATCT
GAATATTGTCTCTCAGATAACTTGGGAGACGACCCCCGGGAAACCTTTCA
TCTTACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m22.g1 MSMg01no152_m22.g1 CHROMAT_FILE:
MSMg01no152_m22.g1 PHD_FILE: MSMg01no152_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:01 2005
         (347 letters)



>mm_chr11_15034538_15035283
          Length = 746

 Score =  456 bits (236), Expect = e-133
 Identities = 312/348 (89%), Gaps = 20/348 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatttcatcctcattctcagagtcaaaatatcattactgtttaaatatgcatcaagatat 60
           |||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 414 gatttcatccacattctcagaatc-aaatatcattactgtttaaatatgcatcaagatat 356

                                                                       
Query: 61  tacgtgaaagataaaactacctgggagctttttacctcttgcataccatgctacttaaaa 120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 355 catgtgaaagataaaactacctgggagctttttacctcttgcataccatgctactaaaaa 296

                                                                       
Query: 121 taacaccaagcttatatcccacagaagaaattaaaacatatctattttgcttttcttcag 180
           ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 taacatcaagcttatatcaaacagaagaaattaaaacatatctattttgcttttcttcag 236

                                                                       
Query: 181 atatcagaatatccatatatctctttatatctctc-tattaacctctacctcaaagacct 239
            ||||||||||||||||||||||||||||||||||  ||                |  ||
Sbjct: 235 ctatcagaatatccatatatctctttatatctctcgcat----------------g--ct 194

                                                                       
Query: 240 ttttcttgtcaatatctctaagtttaaaagttatgggcagttagaaaatacaccatctat 299
           ||||||||||||| ||||||||||||||||||||||||| |||| || ||||||| ||||
Sbjct: 193 ttttcttgtcaatgtctctaagtttaaaagttatgggcaattaggaagtacaccagctat 134

                                                           
Query: 300 agcaattttactcttcccaagtcaaattctaccagtggccttttcttt 347
           |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 133 agcaattttattcttcccaagtcaaattctaccagtggccttttcttt 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 746
Length adjustment: 9
Effective length of query: 338
Effective length of database: 737
Effective search space:   249106
Effective search space used:   249106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)