BAC Information

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BAC

Clone NameMSMg01-154D03
Chromosome11 (Build37)
Map Location 58,915,193 - 59,061,456
singlet/doubletdoublet
Overlap geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1
Upstream geneCnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Downstream geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154D03.T7 (MSMg01no154_d03.b1)MSMg01-154D03.TJ (MSMg01no154_d03.g1)
ACCAG355560AG355561
length700695
length of high quality
(start - end)		627 (74 - 700)599 (79 - 677)
definitionCHROMAT_FILE: MSMg01no154_d03.b1 PHD_FILE: MSMg01no154_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:45 2005CHROMAT_FILE: MSMg01no154_d03.g1 PHD_FILE: MSMg01no154_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,915,193 - 58,915,818)(59,060,858 - 59,061,456)
sequence
GAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCC
GCGGAATTCAATGATTTTCTAGATTTAAAAAAAATCCCCAACTACAGAGA
CATAGGTATCAGAACACATGGTGTATTTACAGTCCCCAAATAGACATGGC
CAGAGAGTCTTCCCTGAGATGTATAATAAGGAGCCTGCTAAAACAAAACA
AAGAAGCAATGTTAAAGGGCTGTAAGAGGAGCAGTGAGATGGGGCAGCAA
ATAAAGTGCTTGCTGCCAAGCCTGGCAGCCTGAGTTCAAGCCCCAGAACC
CGCTTGGAAGAGAAAATTGACTCTGACCTCGACACGAATGCACCATGTGC
TCACACACACAACTTAAAAATGTAATAACTTTTGAAAAGACAAACCCATT
ACAGTAACCTCAGACATCTCAGTAGAAGCCCCCAACCCTAGGAAAACAAG
GGATGGCCTATTCCATGCCCCGGTGGAATGGAATTCCTGGTGGAAAGGAC
TATTCCAACAAAGTTATCTCTTAAAACCAACAGAAATAAAGACAGTTCAA
GAGAAACAAACTAAAGTAACTCGTGACATCCAAGACAACACTTACTTAAG
GCTCTAATTGGAATCCTAAACTCTGAGGAGGAAAAAAGTCTTAATGACAG
TAGCACGTGGATTAATACATTTCACGAGAAGAGTAGATGAACAGGGGAGA


NTTCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATGATCCTCCCCACCCCC
AAGGGTAATTCACACCTCCCTGTCCCTTATCACTTGTGGGTCTGCACTAT
GCTGAGAACCTGAACATGCCAACTCAGGTTCAGGGTCCCAGAGCCAAGTA
GAGACTGTCGACAAGCCTCCAGGGAGGGATGTGGGGTCAGAATTCCAAGA
AAAGAGAATTGAAATAGCTAAGTCAAGAAAAGAGCCGGTCAACTGTAGAA
AAATCTGGAACAGGGTAGATCTGAGAGCTTGAATAGAGGGGTGCAGGTGG
GTTAAATTTAAGCAAGTATGGGAGCGGGGGAAGCATACAGTAGTTAGGAT
ACTTTGGTAGTTCCAGTGAACAGATGAAAAGTCACAGGAGAAGAGGCTTA
ACCAAGACCCCCTCACACGCTGGGGATGCAGAGGAGACGTGGAGCAGATC
GCCTCCCTGTGACTTCATGCTCTCACAGCCCATTCCCCAGAATCATGTAT
TTAGGGTGGGCAGCCCTTGGTATTTGAGGACAGTGGCCTGGCTTGCTGCT
GCTGGCTTCTTATGTGTAAAGTCAACAGATCTTAGACTTTAGTCCTCAGA
CCCTGTCACCAGGAATGTTTCAGATTCTCACCCAAAGGAAGCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_d03.b1 MSMg01no154_d03.b1 CHROMAT_FILE:
MSMg01no154_d03.b1 PHD_FILE: MSMg01no154_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:45 2005
         (627 letters)



>mm_chr11_58914993_58916019
          Length = 1027

 Score = 1129 bits (584), Expect = 0.0
 Identities = 617/628 (98%), Gaps = 3/628 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaaaaaatccccaactacagagacataggtatcagaacacatggtgtatttacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaaaaaatccccaactacagagacataggtatcagaacacatggtgtatttacagt 260

                                                                       
Query: 61  ccccaaataga-catggccagagagtcttccctgagatgtataataaggagcctgctaaa 119
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaaata-atcatggccagagagtcttccctgagatgtataataaggagcctgctaaa 319

                                                                       
Query: 120 acaaaacaaagaagcaatgttaaagggctgtaagaggagcagtgagatggggcagcaaat 179
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 acaaaacaaagaagcaatgttaaagggctgtaagag-agcagtgagatggggcagcaaat 378

                                                                       
Query: 180 aaagtgcttgctgccaagcctggcagcctgagttcaagccccagaacccgcttggaagag 239
           ||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 379 aaagcacttgctgccaagcctggcagcctgagttcaagccccagaactcgcttggaagag 438

                                                                       
Query: 240 aaaattgactctgacctcgacacgaatgcaccatgtgctcacacacacaacttaaaaatg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 439 aaaattgactctgacctcgacacgaatgcaccatgtgctcacacacacaacttaaagatg 498

                                                                       
Query: 300 taataacttttgaaaagacaaacccattacagtaacctcagacatctcagtagaagcccc 359
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 499 taataacttttgaaaaggcaaacccattacactaacctcagacatctcagtagaagcccc 558

                                                                       
Query: 360 caaccctaggaaaacaagggatggcctattccatgccccggtggaatggaattcctggtg 419
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 559 caaccctaggaaaacaagggatggcctattccatgccctggtggaatggaattcctggtg 618

                                                                       
Query: 420 gaaaggactattccaacaaagttatctcttaaaaccaacagaaataaagacagttcaaga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaaaggactattccaacaaagttatctcttaaaaccaacagaaataaagacagttcaaga 678

                                                                       
Query: 480 gaaacaaactaaagtaactcgtgacatccaagacaacacttacttaaggctctaattgga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaaacaaactaaagtaactcgtgacatccaagacaacacttacttaaggctctaattgga 738

                                                                       
Query: 540 atcctaaactctgaggaggaaaaaagtcttaatgacagtagcacgtggattaatacattt 599
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 739 atcctaaactctgaggaggaaaaaagtcttaatgacagtagcaagtggattaatacattt 798

                                       
Query: 600 cacgagaagagtagatgaacaggggaga 627
           ||||||||||||||||||||||||||||
Sbjct: 799 cacgagaagagtagatgaacaggggaga 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no154_d03.g1 MSMg01no154_d03.g1 CHROMAT_FILE:
MSMg01no154_d03.g1 PHD_FILE: MSMg01no154_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:46 2005
         (599 letters)



>mm_chr11_59060658_59061656
          Length = 999

 Score = 1158 bits (599), Expect = 0.0
 Identities = 599/599 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcgatgatcctccccacccccaagggtaattcacacctccctgtcccttatcacttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttcgatgatcctccccacccccaagggtaattcacacctccctgtcccttatcacttgtg 740

                                                                       
Query: 61  ggtctgcactatgctgagaacctgaacatgccaactcaggttcagggtcccagagccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggtctgcactatgctgagaacctgaacatgccaactcaggttcagggtcccagagccaag 680

                                                                       
Query: 121 tagagactgtcgacaagcctccagggagggatgtggggtcagaattccaagaaaagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tagagactgtcgacaagcctccagggagggatgtggggtcagaattccaagaaaagagaa 620

                                                                       
Query: 181 ttgaaatagctaagtcaagaaaagagccggtcaactgtagaaaaatctggaacagggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgaaatagctaagtcaagaaaagagccggtcaactgtagaaaaatctggaacagggtag 560

                                                                       
Query: 241 atctgagagcttgaatagaggggtgcaggtgggttaaatttaagcaagtatgggagcggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atctgagagcttgaatagaggggtgcaggtgggttaaatttaagcaagtatgggagcggg 500

                                                                       
Query: 301 ggaagcatacagtagttaggatactttggtagttccagtgaacagatgaaaagtcacagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggaagcatacagtagttaggatactttggtagttccagtgaacagatgaaaagtcacagg 440

                                                                       
Query: 361 agaagaggcttaaccaagaccccctcacacgctggggatgcagaggagacgtggagcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agaagaggcttaaccaagaccccctcacacgctggggatgcagaggagacgtggagcaga 380

                                                                       
Query: 421 tcgcctccctgtgacttcatgctctcacagcccattccccagaatcatgtatttagggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcgcctccctgtgacttcatgctctcacagcccattccccagaatcatgtatttagggtg 320

                                                                       
Query: 481 ggcagcccttggtatttgaggacagtggcctggcttgctgctgctggcttcttatgtgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggcagcccttggtatttgaggacagtggcctggcttgctgctgctggcttcttatgtgta 260

                                                                      
Query: 541 aagtcaacagatcttagactttagtcctcagaccctgtcaccaggaatgtttcagattc 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagtcaacagatcttagactttagtcctcagaccctgtcaccaggaatgtttcagattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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