BAC Information

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BAC

Clone NameMSMg01-155K07
Chromosome11 (Build37)
Map Location 60,942,590 - 60,942,917
singlet/doubletsinglet
Overlap genenone
Upstream geneRai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12
Downstream geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K07.T7 (MSMg01no155_k07.b1)MSMg01-155K07.TJ (MSMg01no155_k07.g1)
ACCAG356597AG356598
length779776
length of high quality
(start - end)
332 (44 - 375)98 (175 - 272)
definitionCHROMAT_FILE: MSMg01no155_k07.b1 PHD_FILE: MSMg01no155_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:35 2005CHROMAT_FILE: MSMg01no155_k07.g1 PHD_FILE: MSMg01no155_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGTTGCCTTCCTCGACGCCTGGACTAAGGGGTGAGAAGACCCATC
AGTTTGGGGCTTGGAAGAGGAGCGGCGTGATGCGCCCCTGCCTTGCATGT
GGTACGGAGTGTAACCTTATAGTCCTGTTCAGGAGCCTGTAGCACCACGG
TGCAGATATGCCGGGTCTTTCTGTGTGGTGCAAGCTGCTGCCTTGACTTT
TTAAAAGAAGGTTTCAGACTAATCTGCCTCATCAGTTTTCCGTGGAGCAG
CGCCTTGCCATCTAGACAAGCATGTCAGGAGGCCTCGAGAAATTGGAGGT
GCTGCCGACTCTTGGGTTTTAGGGTTCGCAGGAGCCGGTCTAGGTTACAA
TAGTAGTTCCTCCTTCCTTGCTATCTATCAGCAGTGTTGTCTCCTCACGC
TTCTTTCTCTGACTCAGTTGCCGTCATTCTTGTAGGACTTATGACCATCC
TACCGCTTGTTTTTCACTTTTTTTTTTTACACGTATCTGCTTGCTTCATT
CTCTTTTTCACCCTTCCCCCTATTTTTCCCCTTCCTTTTTTTTTTCCTTT
TTCCCCCCCCATTATCCCCCCTCTTTTCCATGCACCCTTCCTTATTATTT
ACATCCCCCCTCTTTCCTCCCTTCCCCTTTTTTTCTCTTCCCTCCTTCTC
CCTTTTATTTTCCTTTTCCCCCCTTTTTTTTCCCTTCCCCTTTTTTTCCC
TCTTCGTTCCTCTACTCCCCTCCTCTTTC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTATTTTTAATGGCATAGTAATATTCCACT
GTGTACATGTACCACATTTTCTTTATCTTTCATCTAACTATTATGAATAC
AACAACAATGAAAATGGTTGAGCAGGTGTCTTTATAGATAGATACTACTT
AAATTTGATTTTTGTCTTGGAATATCTTTTCCTCCAATTATTGCGATTGA
AAGTTATGGTGGGGCTGGTATTTGTAGTCTCTCTCAGCTTTGTCTTTTAC
AGTCTCCATTGACAACTCCTGTGTTATTCTACTATTCTGCCTTACCACAT
GACTTGCCCTTTTCATATCCTGAGTTTGTTCTGTACTTTTACCGTTCTTC
ATATTATTAGCTCCCCTTTACTTTTTATTTAGTCTTACCTTTATTCGTTG
TTTGCATCCCTTCCTGCATCCCCGCTTCCTCTTTCTCCCCTTCATCCCTT
TCCGCCCCTTCCTTTTTCCCCCTTCTTTACCACAATTTATCGCCTTTTCC
ACCCCCATTTTCCATATCCCCATTTACCCCTTTTTTACCTCTTTTTTCCT
TCTTCCCCGTTTTCCGCTTTTCTTTACCCCTTTTCCCCTTTTTTACCCCA
TACCCCTTACACCTTCCTCCCTTTTTCCTTTTTCCGCCATTTCCCCATTT
TTTTCCCTTTTCCCTTTTTTCCCTTTTTCCCCCCCCTTTTTCCATTTCTC
TTTCGCTATACCCGTCCTTATTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k07.b1 MSMg01no155_k07.b1 CHROMAT_FILE:
MSMg01no155_k07.b1 PHD_FILE: MSMg01no155_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:35 2005
         (332 letters)



>mm_chr11_60942386_60943117
          Length = 732

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagttgccttcctcgacgcctggactaaggggtgagaagacccatcagtttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagttgccttcctcgacgcctggactaaggggtgagaagacccatcagtttgg 264

                                                                       
Query: 65  ggcttggaagaggagcggcgtgatgcgcccctgccttgcatgtggtacggagtgtaacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcttggaagaggagcggcgtgatgcgcccctgccttgcatgtggtacggagtgtaacct 324

                                                                       
Query: 125 tatagtcctgttcaggagcctgtagcaccacggtgcagatatgccgggtctttctgtgtg 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatagtcctggtcaggagcctgtagcaccacggtgcagatatgccgggtctttctgtgtg 384

                                                                       
Query: 185 gtgcaagctgctgccttgactttttaaaagaaggtttcagactaatctgcctcatcagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgcaagctgctgccttgactttttaaaagaaggtttcagactaatctgcctcatcagtt 444

                                                                       
Query: 245 ttccgtggagcagcgccttgccatctagacaagcatgtcaggaggcctcgagaaattgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 ttccgtggagcagcgccttgccatctagacaagcatgtcaggaggcctccagaaattgga 504

                                       
Query: 305 ggtgctgccgactcttgggttttagggt 332
           ||||||||||||||||||||||||||||
Sbjct: 505 ggtgctgccgactcttgggttttagggt 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)