BAC Information

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BAC

Clone NameMSMg01-155L01
Chromosome11 (Build37)
Map Location 9,560,648 - 9,561,108
singlet/doubletsinglet
Overlap geneAbca13
Upstream geneTns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155L01.T7 (MSMg01no155_l01.b1)MSMg01-155L01.TJ (MSMg01no155_l01.g1)
ACCAG356632AG356633
length7411,029
length of high quality
(start - end)
461 (58 - 518)---
definitionCHROMAT_FILE: MSMg01no155_l01.b1 PHD_FILE: MSMg01no155_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:38 2005CHROMAT_FILE: MSMg01no155_l01.g1 PHD_FILE: MSMg01no155_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCTGACTTGCTCTCCTTGGTAGCCATTATTATTACACTGATAAA
TTTTGGACGAGGCCATATTTTCTTAGCATTCTATATTGGGAGTCGCCCAT
CAAGAATTTATTTGTTGGGTGATTATTTCTGATGGGCCTGTGTTGAGTTT
TAGTTTGGTTCTTAGTACTTGGTGAGTCTTGGTTCCTTTCAATGTTTCTT
GAAGTTTCACCATGGAAATGATTGGTGTTGATTTATAAATGGAGTAGCTG
AGATTATCTCATCTCAGTTGTGTGGAAGGCACAGTCTGTATCCTCATAAG
CTGGAATCAATGCTATGCATCAGGGGCTGAAAGTGATCAGCAGAACTGTT
CATCCTCTGACCTCAAGTGGCAAATTTTGCATGTTGCTTGGATCACAGCT
AGAAGGGTGAATCTTTTGATTTAATGAGTTTGCATATGTAAAAAAAACAT
TGTGCTTGTGGTTCAAGGGTCAGTGGATCACAAACCTTTTGTTTCCCCAG
TAGGATGCACACAGGATATAAAAACTATAGAGGGATTTCGCAAAGACAGT
AAGAGGTTCTGAGACTTCTAAGCTGTCTGGACAGTTTGCGACTTGGGACA
CAAGTGTGCCTGTGAGGTTTTCAGTCCTTCAGATCTCCTAATTGCCCATT
ACTTTGACAACACACAGCATGGCCCTGTGCACGGCAAGTAG
CCCCCCTCCCNTCCCCCCTCCCCAGAGGCGGGACGGGGTGATTNNCCCCA
CGATGAAGAGGGTAGGCCTGGNGGNCGCCGGTTACTCATCCGATAGGTNG
ANNNANNGAATTACCAAAAGGGGGGGCGANCNCCAGAGANNTTTTATCCC
GCCNGNGCGCGGGTTTTTGCCCCACCAGAAGGGGGGGGGGGGGGAAACAG
GGCCCCGGGCCCTACGGAGCGGGGGGGGAGACCCGCACGAAGGAACAACG
CGAGCCCACCGCAGAGGGGCGCGAGGCAGCGAGGGGCGAGGGGCGGGGGG
ACCCGGCGGGAGGGCGGGGTGTGGGGGGGGGGGACGGGGGCGGTGGGCGC
GGGCGGCGGAGCGGCGGGGTGCGGGGGCGCCGCCCAGGCGGCGGGCCCAT
CTTTTTTTTTTTTTTAGACGGGCAGCGGAGAGCGAGCCGGCCACAGGCGC
GCGGGTTGGAGCCCCCCCGCCCCCGCGCCGCGGGCGGACCCGCGGAGGCG
CCCGGAATCCGTATAGGACGGCCGGGGCGCCACGCAGCACCGCAAAAAAG
AGGACGAACCGGAATGGCGAGGGAGGGCGGGCGGGGGAGGGCGCGGGGAG
GGAANGGCGGCGCAGACGCACGGCGGCCGGCGGCCGAGCCGCGGAACGAA
AGCGCGCGGCGAGACCCCGGGCGGACGCCGATCCGCAAGAGCGGGAGCGG
ACGGAGAGGACGCGGACCAGCCCCGACGAGGGACGGCCGCGCACCGACAA
CAGCAGAACGACGCGCGCGGACAAGAGTGGGAGTACGGTGGCCGCATCCA
GGACCCGCGACAGGCGCGTAGATCCACACACGCGGCGGGGAGGACAGGAG
ACCGAGGCAACACAAGCAGAGCGGAGGCGCGCCGCAGATACACGGCGCTG
GGGATCGCGACCAACGGACCGCGCCGAACACACCCGCGTGTCAAACGAGG
CGGGAGGCGGGAGGCGGCGCCAGAGAGCGGCACAATGCAAGCGGAGCCGC
GCCGCGGCCCAGAGGAGCCGGCACACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_l01.b1 MSMg01no155_l01.b1 CHROMAT_FILE:
MSMg01no155_l01.b1 PHD_FILE: MSMg01no155_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:38 2005
         (461 letters)



>mm_chr11_9560448_9561308
          Length = 861

 Score =  868 bits (449), Expect = 0.0
 Identities = 458/461 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacttgctctccttggtagccattattattacactgataaattttggacgaggccata 60
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ctgacttgctctcattggtagccattattattagactgataaattttggacgaggccata 260

                                                                       
Query: 61  ttttcttagcattctatattgggagtcgcccatcaagaatttatttgttgggtgattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcttagcattctatattgggagtcgcccatcaagaatttatttgttgggtgattatt 320

                                                                       
Query: 121 tctgatgggcctgtgttgagttttagtttggttcttagtacttggtgagtcttggttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgatgggcctgtgttgagttttagtttggttcttagtacttggtgagtcttggttcct 380

                                                                       
Query: 181 ttcaatgtttcttgaagtttcaccatggaaatgattggtgttgatttataaatggagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaatgtttcttgaagtttcaccatggaaatgattggtgttgatttataaatggagtag 440

                                                                       
Query: 241 ctgagattatctcatctcagttgtgtggaaggcacagtctgtatcctcataagctggaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagattatctcatctcagttgtgtggaaggcacagtctgtatcctcataagctggaat 500

                                                                       
Query: 301 caatgctatgcatcaggggctgaaagtgatcagcagaactgttcatcctctgacctcaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatgctatgcatcaggggctgaaagtgatcagcagaactgttcatcctctgacctcaag 560

                                                                       
Query: 361 tggcaaattttgcatgttgcttggatcacagctagaagggtgaatcttttgatttaatga 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tggcaaattttgcatgttgcttggatcacagctagaagggggaatcttttgatttaatga 620

                                                    
Query: 421 gtttgcatatgtaaaaaaaacattgtgcttgtggttcaagg 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttgcatatgtaaaaaaaacattgtgcttgtggttcaagg 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)