BAC Information

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BAC

Clone NameMSMg01-156D18
Chromosome11 (Build37)
Map Location 18,916,229 - 18,916,542
singlet/doubletsinglet
Overlap geneMeis1
Upstream geneLOC627696, LOC627716, LOC665796
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156D18.T7 (MSMg01no156_d18.b1)MSMg01-156D18.TJ (MSMg01no156_d18.g1)
ACCAG357025AG357026
length754782
length of high quality
(start - end)
319 (45 - 363)43 (75 - 117)
definitionCHROMAT_FILE: MSMg01no156_d18.b1 PHD_FILE: MSMg01no156_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:18 2005CHROMAT_FILE: MSMg01no156_d18.g1 PHD_FILE: MSMg01no156_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGAGCTCTTACTGTTAAAATTAATTTTTACAACAGAACGCTCAAC
TTTAGAGATGTAAGGCCAGGGAATTCGGGTTGAAGGATCCTGTTGTACTG
ATCTAAGCTCGGTGCCCTAACGTTCCCGGTTACCCGCCTGGCCTCTGACC
CTTCTTTTTCTCTCCTGTTTGTCATGCAGTACGACGACCTACCCCATTAT
GGGGGTATGGATGGAGTAGGCATCCCCTCCACGATGTATGGGGACCCGCA
TGCAGCCAGGTCCATGCAACCGGTCCACCACCTGAACCACGGGCCTCCTC
TGCACTCGCATCATTTTTCGCACACCCCCCACACCAACGCCATGGCCCCC
AGCATGGGTTCCTCGCCCCCCCACGCTTTAAAGAGATATAAAGATGCCAT
TTATGGGTAGGTATAATGGGCAGGAGCTAAGGAGTTGAGGCGCGATGCTT
CCCCCATTTCCCAAGTCCTTGCAACCGGAAAGTCTGAGCACTCTAGATTA
GAAGTACAATTCACAGTGCGTGCAATCTGGCTTGGGGTGGCAGTGGGTCA
TCCTCCTCTTTACTCAGTCCCTGATTCGACCCCCACTTCCCTCCCTTAGC
ACTTCCACTTGTCGCACTGTTCGTCACCATATTCTCAATCCTCTTTTCAC
ACTCGGCTCCGCTTTTTATGACCTCCTTGACCCTCCTCTTTTTATTCGCG
TGTT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCGGTTTTATTTCTTCTCTTTGGCCC
ACCGTTGTTGTATGCTGGCTGTTCCCCCGTGTGATGTGTGCATATGTGTG
ACATGTATGTTTGTGTTGCGCCGCCCATGCACCCCCATCCTCACCCACGC
AACATTTACTCGACCATCCTGACCCCACCCCCACTCCAAGGCCCCCAGCA
CAGCTGCCACACCACCCACCCTCCCGCTATCCCGACCCACCCCCCACCTT
TCATGCTCCCCCACCATCGCCTCCTCTTCCTCCTAGCCACCCCCTCCCCT
TTCCTCTCCTTCNGCTAGGGTTCCCGGAGCCAAGCCCCAGATNTTGCNNG
GTTTTTGGATNTGTCCCCCCCCCCCCACANNGAGNNGAAACATCCGCCCC
GGCGAGTTGCCCCACTCCCTGCCTCACTCCACGATCCCTGCCCACACCTC
CACCCCCTCTGTCGCTGCCTCCCGCTCACTTCCAGCTCCCCTATGACACC
CTCACACACCCTCCCGTCTCCCCCGTATCCCCGCCTTCTCCCCTCCCCTC
CCTCCCCCCTCCCTCCCCCATCCCCTTGACCTCTACCCCCCCTCCATCCA
TCCCCCCACCTCCCCCCCCCCCCTTCCCCCCGTTCTCTCTTCTTTCCCCC
CCCCCCCCGCCTGTCTCCTCCTATTTCCCTTTTTCCCCCCCCCTCCTTAT
CCCGCGCCTTCCCTTTTCCCCCCCCTTTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_d18.b1 MSMg01no156_d18.b1 CHROMAT_FILE:
MSMg01no156_d18.b1 PHD_FILE: MSMg01no156_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:18 2005
         (319 letters)



>mm_chr11_18916025_18916742
          Length = 718

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggagctcttactgttaaaattaatttttacaacagaacgctcaactttagaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattctggagctcttactgttaaaattaatttttacaacagaacgctcaactttagaga 459

                                                                       
Query: 65  tgtaaggccagggaattcgggttgaaggatcctgttgtactgatctaagctcggtgccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgtaaggccagggaattcgggttgaaggatcctgttgtactgatctaagctcggtgccct 399

                                                                       
Query: 125 aacgttcccggttacccgcctggcctctgacccttctttttctctcctgtttgtcatgca 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 398 aacgttcccggttacccgcctggcctctgaccctt-tttttctctcctgtttgtcatgca 340

                                                                       
Query: 185 gtacgacgacctaccccattatgggggtatggatggagtaggcatcccctccacgatgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtacgacgacctaccccattatgggggtatggatggagtaggcatcccctccacgatgta 280

                                                                       
Query: 245 tggggacccgcatgcagccaggtccatgcaaccggtccaccacctgaaccacgggcctcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tggggacccgcatgcagccaggtccatgcaaccggtccaccacctgaaccacgggcctcc 220

                          
Query: 305 tctgcactcgcatca 319
           |||||||||||||||
Sbjct: 219 tctgcactcgcatca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)