BAC Information

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BAC

Clone NameMSMg01-156G12
Chromosome11 (Build37)
Map Location 26,893,423 - 26,893,731
singlet/doubletsinglet
Overlap geneLOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156G12.T7 (MSMg01no156_g12.b1)MSMg01-156G12.TJ (MSMg01no156_g12.g1)
ACCAG357156AG357157
length847846
length of high quality
(start - end)
315 (97 - 411)---
definitionCHROMAT_FILE: MSMg01no156_g12.b1 PHD_FILE: MSMg01no156_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:32 2005CHROMAT_FILE: MSMg01no156_g12.g1 PHD_FILE: MSMg01no156_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTTTTTTATGGGAGGGNNCCTCTTTCTNTTTNTTACCCCNNNNNNTT
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAATATTTCTCCTTGCAGAATTTTATTGGAGAAGATAATGCCT
TTTTATGTCCTTCTTATGGTTGGGAGAATATAATGTGTCCTTGGGCTCAT
CTACCTGTGTGTGCTAAAAGAGAAATAATTGCAGTTTAAAAACTCTGTTT
TGTCAACAACTTGTTATAATTTCTTTATTACCAACATCATAAAGTCACTG
TGATCTCACAAGGTTATTTTGGGCAAAAGAAATCCCTAGAGAGAAATTGT
TATAAGGAAATAGAAACTGGCTTTGGAGATCTTGTCCTATATCTGTCAAT
CTTTAAAAAATTTTTTTTCATACCCCCCCCCCGTCTGTGCCTCTGTGCTC
TCAAAGAATATGTAACCCCTGTAAAGCAGAAACTAAAACATATGAAATAA
TCAGAAAGTCATTTGGAACTCCAAATTTCTTGCTCTATTACAGAACTTGA
GAGAATAGAGGAATTATACTGATCTCGAATTCTTTCAAAAGATACTACAG
GTTGTAACATCCTAAGGTAAAGTGGCTAGACCCTTGAACCTGTGGAAAAT
TATCCCTTTTCCGCATTTGTTATACCCTAACGCCCCACTGTGTTATTTAC
CCTACGGTCTATTATTCTATTTTTATGAGCTTCCACCCCTTTTTCCTGTT
TCCATTTTCCTTTCCTTGAAGAACTGCTGAATTCTATCATACCTAATAAT
GCGACCCTCTCATACCTCACTTGATACATATCCTCATTTTTCGGTAC
TTTTTTTGTTNGNTNNNTNNNNTTTTTCGCTTTTTCTACTTTTNNNNTTA
ACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAAACATCAGGAATTCAAGG
CCCATAGTAAAAGCAATACACAGCATTCCAGCAGTCAACATCAAACTAAT
GGGATAGAAACTTGAAACAATCCCACTAAAATCAGGCACTAAACAAGGTG
GCCCATTCTCTCCCTACCTATTCAATATAGAACTGAAAGTTCTAGCTAGA
GCAATTAAACAACAAAGGGAGGCCAGGAGGGATACAAATTGGAAAGGAAA
AATTCAAAATATCACTATGGGCAAATGATATGAAAGAACACTTAAGGGAC
CCCAAATATTCCTTTAATTTTTCCCTCCCCCCCCCCCAAAAAAAAAAAAA
ATTTCAGCCAATGGGTGTGCCCCAAAATAAATAAAAAAAAACCGGTGGGT
TTCCCCTACTGAAGGGAAAAATATTCTGAAAAAAAATTCCAAAAAATGAC
CCCCTTCCTAATATCCCCAAATAATATTATTGGCCTTGGGGGGACCCTAC
CTTAGCATGTAAGGATCGGTAGGACAAAAATTTAAAGTTCCTGAAAAAAA
TTAATAAAAATCTTCAAAAAAAGTAAAAGATCTCCCCAGGTTACTTATAT
TAGTTGGAAATATATATAGCAAAAAATATGGCCTCCTTGGTTAAAAAGGA
ATTCTCACCTAATTTAAATGACAATCCTCAACCTAAAATTCCCCAAAAAA
ATTCTCTTTCTTAAGTAGTTTAATAAAGTACTCATCTCTGCTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_g12.b1 MSMg01no156_g12.b1 CHROMAT_FILE:
MSMg01no156_g12.b1 PHD_FILE: MSMg01no156_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:32 2005
         (315 letters)



>mm_chr11_26893219_26893933
          Length = 715

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataatatttctccttgcagaattttattggagaagataatgcctttttatgtcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataatatttctccttgcagaattttattggagaagataatgcctttttatgtcc 264

                                                                       
Query: 65  ttcttatggttgggagaatataatgtgtccttgggctcatctacctgtgtgtgctaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcttatggttgggagaatataatgtgtccttgggctcatctacctgtgtgtgctaaaag 324

                                                                       
Query: 125 agaaataattgcagtttaaaaactctgttttgtcaacaacttgttataatttctttatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaataattgcagtttaaaaactctgttttgtcaacaacttgttataatttctttatta 384

                                                                       
Query: 185 ccaacatcataaagtcactgtgatctcacaaggttattttgggcaaaagaaatccctaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaacatcataaagtcactgtgatctcacaaggttattttgggcaaaagaaatccctaga 444

                                                                       
Query: 245 gagaaattgttataaggaaatagaaactggctttggagatcttgtcctatatctgtcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaaattgttataaggaaatagaaactggctttggagatcttgtcctatatctgtcaat 504

                    
Query: 305 ctttaaaaa 313
           |||||||||
Sbjct: 505 ctttaaaaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)