BAC Information

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BAC

Clone NameMSMg01-156G21
Chromosome11 (Build37)
Map Location 115,940,003 - 116,104,934
singlet/doubletdoublet
Overlap geneWbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl
Upstream geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d
Downstream geneSrp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156G21.T7 (MSMg01no156_g21.b1)MSMg01-156G21.TJ (MSMg01no156_g21.g1)
ACCAG357174AG357175
length677797
length of high quality
(start - end)
294 (14 - 307)285 (131 - 415)
definitionCHROMAT_FILE: MSMg01no156_g21.b1 PHD_FILE: MSMg01no156_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:33 2005CHROMAT_FILE: MSMg01no156_g21.g1 PHD_FILE: MSMg01no156_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,104,643 - 116,104,934)(115,940,003 - 115,940,286)
sequence
ATTTTCCTGCAACCACGTGATGGCTCACAGCCATCTACAGCTACAGTATA
CTCTGATATATAAGAGAAAGAAAGAAAAAAGAAAATGGACCTGACGGGTC
AGAGCTGAGGTCTCTAATTAGCTCACAATTGGGTTCATGGAGATTCAGGC
AGTCTGGATCACAGACCTCAGGCTCAGGAGATGGGCCCTGTTCTGTTGTG
GCTCATGTCCTTTCTCTGTCTTCTGTCTCTCTGAATTGAGAGAGGACTCT
AGGGAGAATCCACCCCTTTAATTAACACTCACTGTGGTTTCGAGTCTACC
CGATGTTATTCTTCTACCCCCCCCCCTCTGCTGGGACAAGGGACACTGGT
GCAGGGGGCCTTCCAAACTCCTGAAAAGATTTCCCCATCATGCCCTCGCC
TGATGTGTGCCTCTCCCTCGGTACTTCACATCAAGAGTGAACTTTTGGAA
CTCCTGATTGCAGTGGGACATTGCCAGGCCTGCATCCTTCCCTGTGACAA
CTGAGGCTCTCTCCAGAGTATCAAGCTGACAGTTTATGATGACTGAGCAA
TCCTTGTCCCTCAGTGACCTTAGACCACAGGAAGCACTTCTTCCTAAAAA
GCTGGGGACCTGGCTTTCATACTGTCCTGCAAAGAAGGACCTTGCGCACC
TCTCCCGTGGCGTGATTATATCCACCT
AAGAAAAAATTAATAATATTTGTCGCTTTTTTGTCATTNTTAATATATNN
TCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAAATAACCATCTCCT
CATTTTGTGTCTGGACCAGGAACGAACAAGAGCAATTCTTAGTGCATCCA
GGGGGCGTGAAGCTTACAGAGGGGCGGACTGCAGGTTAGAGGTCACATAG
TTGGAAGGCCTCAGTCCCAGATCAAAGGGCCTGGTGGGACAGACATGCAT
TCTCTATCCCTCCTGCAGAGCAGCCCCCTGTAAAGGGGAGAGGAGAGGAG
GCGAATAATTCCCAGAAACAGTAGCATAGGGGCAGAGGGGCTTCCTCTGT
AACACAGTGGCTTCTTCCTCAGTATGCCACCCCCCGCAAGCGCCCAGTAA
AATCCCTGGAAGCTCTCACAAAGAACAAGGAGAACAGAATAAGTGTGACT
GGACTGACAGTCTGCTGGGACAGCGGCCTTCCAGAGCCAGGAGCACACCA
GGGGTAAGGAATGTGAACAGGGTTTGGCAGGGCCTGTTGGGGAGACACAT
GGCTGGTCTTAGGAGCCCAAGAGATGAAGAACAATGGTCACCAGGCTGAA
GGGGCTGGGCAACAGTGAGGAGTGGCCAGAGAGTCCCTCTGTATGGGTGG
GGGCTAGTATCATGAGGAACGAGGGTCACCCCGGGCCCCTGCGAGCTCCA
TAAATGGTGAAAGGGAACCTGGAAAAAAAAGCGCTGAGAGCTGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_g21.b1 MSMg01no156_g21.b1 CHROMAT_FILE:
MSMg01no156_g21.b1 PHD_FILE: MSMg01no156_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:33 2005
         (294 letters)



>mm_chr11_116104443_116105136
          Length = 694

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgtgatggctcacagccatctacagctacagtatactctgatatataagagaaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 492 cacgtgatggctcacagccatctacagctacagtatactctgatacataagagaaagaaa 433

                                                                       
Query: 61  gaaaaaagaaaatggacctgacgggtcagagctgaggtctctaattagctcacaattggg 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaaaaaagaaaatggacctgacaggtcagagctgaggtctctaattagctcacaattggg 373

                                                                       
Query: 121 ttcatggagattcaggcagtctggatcacagacctcaggctcaggagatgggccctgttc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 372 ttcatggagattcaggcagtctggatcacagacttcaggctcaggagatgggccctgttc 313

                                                                       
Query: 181 tgttgtggctcatgtcctttctctgtcttctgtctctctgaattgagagaggactctagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgttgtggctcatgtcctttctctgtcttctgtctctctgaattgagagaggactctagg 253

                                                               
Query: 241 gagaatccacccctttaattaacactcactgtggtttcgagtctacccgatg 292
           |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 252 gagaatccacccctttaattaacactcactgtggcttcgagtctacccgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no156_g21.g1 MSMg01no156_g21.g1 CHROMAT_FILE:
MSMg01no156_g21.g1 PHD_FILE: MSMg01no156_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:34 2005
         (285 letters)



>mm_chr11_115939803_115940487
          Length = 685

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttaaataaccatctcctcattttgtgtctggaccaggaacgaacaagagcaattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttaaataaccatctcctcattttgtgtctggaccaggaacgaacaagagcaattctt 260

                                                                       
Query: 61  agtgcatccagggggcgtgaagcttacagaggggcggactgcaggttagaggtcacatag 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 agtgcatccagggggcgtgaagcttacagaggggcagactgcaggttagaggtcacatag 320

                                                                       
Query: 121 ttggaaggcctcagtcccagatcaaagggcctggtgggacagacatgcattctctatccc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttggaaggcctcagtcccagatcaaagggcctggcgggacagacatgcattctctatccc 380

                                                                       
Query: 181 tcctgcagagcagccccctgtaaaggggagaggagaggaggcgaataattcccagaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgcagagcagccccctgtaaaggggagaggagaggaggcgaataattcccagaaaca 440

                                                       
Query: 241 gtagcataggggcagaggggcttcctctgtaacacagtggcttc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagcataggggcagaggggcttcctctgtaacacagtggcttc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)