Query= MSMg01no157_e04.b1 MSMg01no157_e04.b1 CHROMAT_FILE:
MSMg01no157_e04.b1 PHD_FILE: MSMg01no157_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:34 2005
(339 letters)
>mm_chr11_12091337_12092075
Length = 739
Score = 611 bits (316), Expect = e-179
Identities = 334/340 (98%), Gaps = 2/340 (0%)
Strand = Plus / Plus
Query: 1 actgctgtgcggagtggcttgagccatggggatgatggtagtgtcctgagtctgtagtag 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 actgctgtgcggagtggcttgagc-atggggatgatggtagtgtcctgagtctgtagtaa 259
Query: 61 cagttttaccttctgtgggtgg-gcattctgatgccatggtagatagcacagtctgcaga 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagttttaccttctgtgggtggtgcattctgatgccatggtagatagcacagtctgcaga 319
Query: 120 cacttacttggccttgtcaactggcaggtgaaagtgccaattgctattggctcatatcca 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 cacttacttggccttgtcaactggcaggtgaaagtgccaattgttattggctcatatcca 379
Query: 180 cttatgtactcagcagatgttactaactgcttattctgggccaggtacccggaatatagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttatgtactcagcagatgttactaactgcttattctgggccaggtacccggaatatagc 439
Query: 240 aattgacaagacagcctttttgctctccagaggaaaatgcaaagtaaacagaccagagaa 299
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 aatagacaagacagcctttttgctctacagaggaaaatgcaaagtaaacagaccagagaa 499
Query: 300 atatttcacagagtgagagctataataaccatagtacagg 339
||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atatttcacagagtgagagctataataaccatagtacagg 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_e04.g1 MSMg01no157_e04.g1 CHROMAT_FILE:
MSMg01no157_e04.g1 PHD_FILE: MSMg01no157_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:34 2005
(645 letters)
>mm_chr11_12257594_12258639
Length = 1046
Score = 884 bits (457), Expect = 0.0
Identities = 475/483 (98%), Gaps = 5/483 (1%)
Strand = Plus / Minus
Query: 1 tcctcccaaagtatttgcagtgagagctcagattagttccccttatcc---acctacttg 57
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 481 tcctcccaaagtatttgcagtgagagctcagattagttccccttatccaaaa--tacttg 424
Query: 58 gcagaagaaatatctgcagtatttgtgtttggttttctagctgatagtccttaatttaaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcagaagaaatatctgcagtatttgtgtttggttttctagctgatagtccttaatttaaa 364
Query: 118 agttcaaaatctgagaggcttcacagtgggaaacataagcatcctgtcagcacccaaaac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agttcaaaatctgagaggcttcacagtgggaaacataagcatcctgtcagcacccaaaac 304
Query: 178 atctggaacgccagagttcgttaggtttctaattgtccaattagagatgtgtttatcagc 237
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atctggaatgccagagttcgctaggtttctaattgtccaattagagatgtgtttatcagc 244
Query: 238 atgtgttactgaagtaacatagcttaagacagggagattacaaagatggcttgtggtggg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 243 atgtgttactgaagtaacatagcttaagacagggagattacaaagatggcttggggtggg 184
Query: 298 taaagtgtttgccacacaagcatgactgggttcagacttgccagcacccactcatgttta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 taaagtgtttgccacacaagcatgactgggttcagacttgccagcacccactcatgttta 124
Query: 358 agtttggcaatgtgtgcctgtaatcccaacactgggagggaggcagaaacaggagaatcc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agtttggcaatgtgtgcctgtaatcccaacactgggagggaggcagaaacaggagaatcc 64
Query: 418 cagcgactcttaaaagtaaagagtggagagcaatagagctctaccattcacatgtggtct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 cagcgactcttaaaagtaaagagtggagagcaatagagctctaccattcacatgtggtct 4
Query: 478 ctg 480
|||
Sbjct: 3 ctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|