BAC Information

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BAC

Clone NameMSMg01-157E04
Chromosome11 (Build37)
Map Location 12,091,537 - 12,258,074
singlet/doubletdoublet
Overlap geneCobl
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157E04.T7 (MSMg01no157_e04.b1)MSMg01-157E04.TJ (MSMg01no157_e04.g1)
ACCAG357789AG357790
length713716
length of high quality
(start - end)
339 (375 - 713)645 (69 - 713)
definitionCHROMAT_FILE: MSMg01no157_e04.b1 PHD_FILE: MSMg01no157_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:34 2005CHROMAT_FILE: MSMg01no157_e04.g1 PHD_FILE: MSMg01no157_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,091,537 - 12,091,875)(12,257,594 - 12,258,074)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TTTTTCTGTCTTTAAGAAGTATTGGAAAAGCAGTTATACAACAGGGCTAT
CTGTCTTCCTTGGGGCAACCCAAGGTTCTAAAAAATACCTGAGCTCTTTG
CTCCAGGTATGGTCAATCATTTCTGTATCCCTGTTTATGAATTCACAAGG
ACAAGGCTATTTCCAACCACAGAAGATGAGCTGAATATGAAGCTTGCAAC
ACTCACTCATAGTCCTTTCCCTCTCTATCTACAGGTATGACAGATGGTAC
CCAGCCCTGTTACTATTGCATTCATGAAAGAAGACAGACAGATGGTTAAA
TTTCCTGTCTACAGCCCCCACCCCACTGCTGTGCGGAGTGGCTTGAGCCA
TGGGGATGATGGTAGTGTCCTGAGTCTGTAGTAGCAGTTTTACCTTCTGT
GGGTGGGCATTCTGATGCCATGGTAGATAGCACAGTCTGCAGACACTTAC
TTGGCCTTGTCAACTGGCAGGTGAAAGTGCCAATTGCTATTGGCTCATAT
CCACTTATGTACTCAGCAGATGTTACTAACTGCTTATTCTGGGCCAGGTA
CCCGGAATATAGCAATTGACAAGACAGCCTTTTTGCTCTCCAGAGGAAAA
TGCAAAGTAAACAGACCAGAGAAATATTTCACAGAGTGAGAGCTATAATA
ACCATAGTACAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCTCCCAAAGTATTTGCAGTGAGAGCTCAGA
TTAGTTCCCCTTATCCACCTACTTGGCAGAAGAAATATCTGCAGTATTTG
TGTTTGGTTTTCTAGCTGATAGTCCTTAATTTAAAAGTTCAAAATCTGAG
AGGCTTCACAGTGGGAAACATAAGCATCCTGTCAGCACCCAAAACATCTG
GAACGCCAGAGTTCGTTAGGTTTCTAATTGTCCAATTAGAGATGTGTTTA
TCAGCATGTGTTACTGAAGTAACATAGCTTAAGACAGGGAGATTACAAAG
ATGGCTTGTGGTGGGTAAAGTGTTTGCCACACAAGCATGACTGGGTTCAG
ACTTGCCAGCACCCACTCATGTTTAAGTTTGGCAATGTGTGCCTGTAATC
CCAACACTGGGAGGGAGGCAGAAACAGGAGAATCCCAGCGACTCTTAAAA
GTAAAGAGTGGAGAGCAATAGAGCTCTACCATTCACATGTGGTCTCTGCA
TGCACACCCACACATGTGCACATGCATGTTAAAGTCAGAAAAGTAAGACA
ATCTGGGATGCATGTTAGCCTGTCCTTTTATGTATGTGATCTTGTGTTCC
ATCTCCATAAATACTCTTTGTCTCTGTCGCTCTCTCTGTCTCTGCCCCTC
CCTTTCTCTCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_e04.b1 MSMg01no157_e04.b1 CHROMAT_FILE:
MSMg01no157_e04.b1 PHD_FILE: MSMg01no157_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:34 2005
         (339 letters)



>mm_chr11_12091337_12092075
          Length = 739

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%), Gaps = 2/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgctgtgcggagtggcttgagccatggggatgatggtagtgtcctgagtctgtagtag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 201 actgctgtgcggagtggcttgagc-atggggatgatggtagtgtcctgagtctgtagtaa 259

                                                                       
Query: 61  cagttttaccttctgtgggtgg-gcattctgatgccatggtagatagcacagtctgcaga 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagttttaccttctgtgggtggtgcattctgatgccatggtagatagcacagtctgcaga 319

                                                                       
Query: 120 cacttacttggccttgtcaactggcaggtgaaagtgccaattgctattggctcatatcca 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 cacttacttggccttgtcaactggcaggtgaaagtgccaattgttattggctcatatcca 379

                                                                       
Query: 180 cttatgtactcagcagatgttactaactgcttattctgggccaggtacccggaatatagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttatgtactcagcagatgttactaactgcttattctgggccaggtacccggaatatagc 439

                                                                       
Query: 240 aattgacaagacagcctttttgctctccagaggaaaatgcaaagtaaacagaccagagaa 299
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 aatagacaagacagcctttttgctctacagaggaaaatgcaaagtaaacagaccagagaa 499

                                                   
Query: 300 atatttcacagagtgagagctataataaccatagtacagg 339
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atatttcacagagtgagagctataataaccatagtacagg 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_e04.g1 MSMg01no157_e04.g1 CHROMAT_FILE:
MSMg01no157_e04.g1 PHD_FILE: MSMg01no157_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:34 2005
         (645 letters)



>mm_chr11_12257594_12258639
          Length = 1046

 Score =  884 bits (457), Expect = 0.0
 Identities = 475/483 (98%), Gaps = 5/483 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcccaaagtatttgcagtgagagctcagattagttccccttatcc---acctacttg 57
           ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||||
Sbjct: 481 tcctcccaaagtatttgcagtgagagctcagattagttccccttatccaaaa--tacttg 424

                                                                       
Query: 58  gcagaagaaatatctgcagtatttgtgtttggttttctagctgatagtccttaatttaaa 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcagaagaaatatctgcagtatttgtgtttggttttctagctgatagtccttaatttaaa 364

                                                                       
Query: 118 agttcaaaatctgagaggcttcacagtgggaaacataagcatcctgtcagcacccaaaac 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agttcaaaatctgagaggcttcacagtgggaaacataagcatcctgtcagcacccaaaac 304

                                                                       
Query: 178 atctggaacgccagagttcgttaggtttctaattgtccaattagagatgtgtttatcagc 237
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atctggaatgccagagttcgctaggtttctaattgtccaattagagatgtgtttatcagc 244

                                                                       
Query: 238 atgtgttactgaagtaacatagcttaagacagggagattacaaagatggcttgtggtggg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 243 atgtgttactgaagtaacatagcttaagacagggagattacaaagatggcttggggtggg 184

                                                                       
Query: 298 taaagtgtttgccacacaagcatgactgggttcagacttgccagcacccactcatgttta 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 taaagtgtttgccacacaagcatgactgggttcagacttgccagcacccactcatgttta 124

                                                                       
Query: 358 agtttggcaatgtgtgcctgtaatcccaacactgggagggaggcagaaacaggagaatcc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agtttggcaatgtgtgcctgtaatcccaacactgggagggaggcagaaacaggagaatcc 64

                                                                       
Query: 418 cagcgactcttaaaagtaaagagtggagagcaatagagctctaccattcacatgtggtct 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  cagcgactcttaaaagtaaagagtggagagcaatagagctctaccattcacatgtggtct 4

              
Query: 478 ctg 480
           |||
Sbjct: 3   ctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space:   657860
Effective search space used:   657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)