BAC Information

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BAC

Clone NameMSMg01-157E09
Chromosome11 (Build37)
Map Location 84,887,200 - 84,887,536
singlet/doubletsinglet
Overlap geneUsp32
Upstream geneTada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, LOC668794
Downstream geneLOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157E09.T7 (MSMg01no157_e09.b1)MSMg01-157E09.TJ (MSMg01no157_e09.g1)
ACCAG357798AG357799
length759770
length of high quality
(start - end)
313 (35 - 347)289 (62 - 350)
definitionCHROMAT_FILE: MSMg01no157_e09.b1 PHD_FILE: MSMg01no157_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:35 2005CHROMAT_FILE: MSMg01no157_e09.g1 PHD_FILE: MSMg01no157_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCAAA
TGAACCAAATTCAACACAGAAAAATTACATTAACTGATTTTAACTTTGTA
AATTTTTTATTAACCTTGTAAAAATACATTTCCCCCTTTGTAATAAAGAT
GCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAAACAATATATTCAGAAGGAAAGAGATGGGAGTGGTACTG
GCCACTTTCTAGAAACACACGTTAGTGCTAGCACACATACACTGTTCATT
TTTTGAATATAGACTACTTATTCCTCAAATATCATAAGAACTGGCAACTG
TTCTTTTTTTCCCCCCCCCCCCCCCTTGTTTTTACTTAAGAAAAATAGCA
ATTGGGCTCCACAGATGAATAAAAAGCTACGATCGCGGAGGAGACCTCAG
TTCAATTCGCAGCGCCCATACGGAAGCCCCTAATTGTCTGTAACTCCAGT
TCCAGAGAGTCCAACACTCTCACACAGATATCGATTACAGGGATAACACT
AATGCAAATTTTAAAAAATTTCATGTTATTAAATATGAGCGTTACCATAT
TACGACTTCCATATCTTTCATCTTGAAGTGTGCATAATATATTGTTTTAC
CATTACTCACCCCCCCTCGTGGCTTTTTTCTGTATTGATCTCTTATACTT
CACCCTGGTGAACACTTATCCCTCTCTTGTTCCCTTCTCTCTTGCGCCAC
CCGGGATTC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTGAAATGCTTAGAAGGATTGGAGGTGTGGCCTTGTTA
GAGGAAGTGTGTCACTAGGGTACACTTTGAGGTTTCAAAAGCCCATAGCA
GGCCTGGCCTGTCTCTCTTCCTTTTCGTTCCTCTCCCCATCCTCTGCTTA
TAGATTAGGATGTGTAGCTCTCAGCCACCTCTCCAACATCATGCTTGCCT
GCAACTGTGCTCCTCGCCATGATGATAAAGGACTAATCGTCTGAACCTGA
AAGCCAGCCTCCAGTTAAATGATTTCTTTTATAAGAGTTTCCTTTGTTAT
GAGAAAATCCCGCAGAAGGGTTGAAAGGGGAAAAGGGTAATATAGGAATA
AGATAAAGGGTGGGTTATTGAATCTTTTTTGGGGGGGGTGAGTGGTATTT
GTCTTAATATATTTAAGATATTGTCGTTACTTTTTTTTCCTACCTCCCTC
TATTCTTGTTGCTTACCAGCATAGCTGCTAATAGATTTTTGTTCCCCTTA
AAACCCCGGCGCGAGTTTTGTTTCTCTCGGATCTATAACCGCATTGACCA
TTATGTCCCTCCTTTCTTCTTCATTTGTTTTTACCGATCGCACAACCCTT
TATCGAGGGGCCGCGCTTGATACAACCCGACTCTAACGTACTCACAACCA
ATCTATTGTATTGCTTAAACTGGCTTGCCTTAATCCGCTTGGTCTCATGT
CACTTTATGCCTGTTGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_e09.b1 MSMg01no157_e09.b1 CHROMAT_FILE:
MSMg01no157_e09.b1 PHD_FILE: MSMg01no157_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:35 2005
         (313 letters)



>mm_chr11_84887024_84887736
          Length = 713

 Score =  495 bits (256), Expect = e-144
 Identities = 304/338 (89%), Gaps = 30/338 (8%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaaatgaaccaaattcaacacagaaaaattacattaactgattttaactttg 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gaattcatcaaatgaaaaaaattcaacacagaaaaattacattaactgattttaactttg 236

                                                                       
Query: 65  taaattttttattaac-cttgtaaaaatacatttccccctttgtaataaagatgcagggt 123
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 taaattttttattaactct-gtaaaaatacatttccccctttgtaataaagatgcagggt 295

                                                                       
Query: 124 gtgtgtgtgtgtgtgtgtgtgtgtg----------------------------agagaga 155
           |||||||||||||||||||||||||                            |||||||
Sbjct: 296 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagaga 355

                                                                       
Query: 156 gagagagagagagagagagagaaacaatatattcagaaggaaagagatgggagtggtact 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gagagagagagagagagagagaaacaatatattcagaaggaaagagatgggagtggtact 415

                                                                       
Query: 216 ggccactttctagaaacacacgttagtgctagcacacatacactgttcattttttgaata 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggccactttctagaaacacacgttagtgctagcacacatacactgttcattttttgaata 475

                                                 
Query: 276 tagactacttattcctcaaatatcataagaactggcaa 313
           ||||||||  ||||||||||||||||||||||||||||
Sbjct: 476 tagactacaaattcctcaaatatcataagaactggcaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)