BAC Information

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BAC

Clone NameMSMg01-157G16
Chromosome11 (Build37)
Map Location 59,774,559 - 59,944,541
singlet/doubletdoublet
Overlap geneMed9, Rasd1, Pemt, Rai1
Upstream geneLOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m
Downstream geneSrebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157G16.T7 (MSMg01no157_g16.b1)MSMg01-157G16.TJ (MSMg01no157_g16.g1)
ACCAG357902AG357903
length740740
length of high quality
(start - end)
319 (33 - 351)287 (63 - 349)
definitionCHROMAT_FILE: MSMg01no157_g16.b1 PHD_FILE: MSMg01no157_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:45 2005CHROMAT_FILE: MSMg01no157_g16.g1 PHD_FILE: MSMg01no157_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,944,229 - 59,944,541)(59,774,559 - 59,774,844)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTTTCC
TGGTGATGCTCTGAAGACTGAATGTGGAAACTCTGCTTCACTGTGCTTTC
AGATCAAAAGCTCCTATACTTGGTGCCATGAGGAAGTGACCACCAATACA
TGCCCTGGGCTACAGTGTCTGTCTTTTCATGACCTCCGAATGGCATTTGA
GGGGCCCTTTGATCAGGCCAGAAACTAGGGTTCAAAGGGGCTCAAGCTGA
GAAAGGTGGCAGCCAGGGTGAGATTCTACCTCCAAATAAGGAAGAGCCTG
CTTACAGGCAGAGCTGCCCAGAAATGGAAGGTGCAAGCAGCAACTGTGTT
GTTTGTGGCCCCCCCCCCCCCCCATGTAAGCGGAGGAAGCCGCAGCTGCA
GCTGCCGTAGCTGGAACACTCACTACCAGACACTGCTGGCAGCCAGGGTC
TTGGGACTCCACCACAGCCACATGGGCAGGAGTGTATTCCAGGAGGCCAG
AGCTGGGCCAGAGCAAGCGCTACTGCTCCAGGATCCCACACAGCAGGGCT
GGGTGAAAAGCCCCGCTCCTCCTCAGCATGTAAAATAGTTATTTTTCTAG
AGGAATACCTACTTTTAATTTTTAAAGAGGGGGTAAGTAGTAAGTACACC
AAGCTGATAGAAAACAAACGTTCCCAGCTTCCTTCACTCTACGAATTTCT
GCAAATTCCTTCAGATCTCTTCTACATGCTTCAATTTGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACGGGGTAAATTAGGCCTGTACTCAGATGGCATGGATT
TATTATAATTAACCCCAAGCTGTGAGAGTATGAACATTGTTTTGAAAGGC
CAGAGGGTGGGTGGCTTCTCCCTTGAAACAGTTCACTTCCTTTTTTGTTT
GAACTACTGAATGAAACTATATCTCTGGGGGCGTCAGCCCAGAGCTCCAC
GATCCAGCCACCAACTCCAGTTTCCAGCCTCCTGCATGCTAGCCTTATAG
GCTCTTGCTCCCTTTATCTCTATCACTTCAGGCAGTGCTCAGAATAGCCG
ATTTTCTGCTTGCCCGCCCCCCCTTTGTCCTTCCCACACTGGCTCAAAGA
GGCTGTTAAGGAAGCGGATCTGCCCTGATTCGTATGCCCTGGCTTACCTC
TGTCTCCCCTTTAGCCAAGAAGTCACATTTGCTACTCTGCACATGGTCCC
TGCACACTTCTGGTTTGGAGCAAAGTAGCTGGCAGGAGCAATCAGGGCAG
TTTCTCAGCCAGGGTTATGTGTGGTTTGAAGGGCGTGGGGAGCTAAGTCT
GGAGGTTCCATAGCTGTGTTCTACTTGTAGAGTGTACTCAGCGACTCGCA
GGTAGGACACCGTGTTCTCTGTCTCTCAGGGACTGCTACACTGAGGGCAC
CATGGCCCTTTTCCTTCTCAGGGGAAGGTGAGAAGTACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_g16.b1 MSMg01no157_g16.b1 CHROMAT_FILE:
MSMg01no157_g16.b1 PHD_FILE: MSMg01no157_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:45 2005
         (319 letters)



>mm_chr11_59944120_59944838
          Length = 719

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagtttcctggtgatgctctgaagactgaatgtggaaactctgcttcactgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggaattccagtttcctggtgatgctctgaagactgaatgtggaaactctgcttcactgtg 363

                                                                       
Query: 64  ctttcagatcaaaagctcctatacttggtgccatgaggaagtgaccaccaatacatgccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctttcagatcaaaagctcctatacttggtgccatgaggaagtgaccaccaatacatgccc 303

                                                                       
Query: 124 tgggctacagtgtctgtcttttcatgacctccgaatggcatttgaggggccctttgatca 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 302 tgggctacagtgtctgtcttttcatgacctccgaatggcattcgaggggccctttgatca 243

                                                                       
Query: 184 ggccagaaactagggttcaaaggggctcaagctgagaaaggtggcagccagggtgagatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggccagaaactagggttcaaaggggctcaagctgagaaaggtggcagccagggtgagatt 183

                                                                       
Query: 244 ctacctccaaataaggaagagcctgcttacaggcagagctgcccagaaatggaaggtgca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctacctccaaataaggaagagcctgcttacaggcagagctgcccagaaatggaaggtgca 123

                        
Query: 304 agcagcaactgtg 316
           |||||||||||||
Sbjct: 122 agcagcaactgtg 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_g16.g1 MSMg01no157_g16.g1 CHROMAT_FILE:
MSMg01no157_g16.g1 PHD_FILE: MSMg01no157_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:45 2005
         (287 letters)



>mm_chr11_59774359_59775044
          Length = 686

 Score =  524 bits (271), Expect = e-153
 Identities = 283/289 (97%), Gaps = 5/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acggggtaaattaggcctgtactcagatggcatggatttattataattaa--ccccaagc 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||  |   ||||
Sbjct: 201 acggggtaaattaggcctgtactcagatggcatggatttattataattaaagc---aagc 257

                                                                       
Query: 59  tgtgagagtatgaacattgttttgaaaggccagagggtgggtggcttctcccttgaaaca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtgagagtatgaacattgttttgaaaggccagagggtgggtggcttctcccttgaaaca 317

                                                                       
Query: 119 gttcacttccttttttgtttgaactactgaatgaaactatatctctgggggcgtcagccc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gttcacttccttttttgtttgaactactgaatgaaactatatctctgggggcgtcagccc 377

                                                                       
Query: 179 agagctccacgatccagccaccaactccagtttccagcctcctgcatgctagccttatag 238
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agagctccacgatctagccaccaactccagtttccagcctcctgcatgctagccttatag 437

                                                            
Query: 239 gctcttgctccctttatctctatcacttcaggcagtgctcagaatagcc 287
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gctcttgctccctttatctctatcacttcaggcagtgctcagaatagcc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)