BAC Information

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BAC

Clone NameMSMg01-157L14
Chromosome11 (Build37)
Map Location 75,876,052 - 75,876,337
singlet/doubletsinglet
Overlap geneVps53
Upstream geneSmg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik
Downstream geneLOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157L14.T7 (MSMg01no157_l14.b1)MSMg01-157L14.TJ (MSMg01no157_l14.g1)
ACCAG358127AG358128
length729730
length of high quality
(start - end)
316 (38 - 353)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no157_l14.b1 PHD_FILE: MSMg01no157_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:07 2005CHROMAT_FILE: MSMg01no157_l14.g1 PHD_FILE: MSMg01no157_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GGAAGGGCAGCCAGTGCTCTTAACTGCCGAGCCATCTCTCCAGTCCTTCT
TTCTGTTTCTTTTGAAATGGGGTATTACTACGTAGCTCAGATGAAGCTCC
AACTGCCATCATCCTGCCTGAGCCTCCCAAGCACTGACTGAGGTTACAGG
TGTGGGCCACACCTAGCTTCCAGTCACCCATCAAAGGGTATGTCCTCCAA
GACTTAGTTTTGCTTCATTTATTGTCTTATGTATCCAAGACTGACCTTTC
AATATGTAGCCGAAGATGACCTTCAACCTCTAATCCACCTGCTTCTTCCT
CACTTTTGCTGGCCACCCCCCCCCAGTACCAGCACACCCAGGCTATGCCA
TGCTAAGGACCACACCCAGGGCTTTGTGCACAATAGATAGCACATCACCA
ACTGAGCCACACCCCCAGCTACTTCCTTCAAAGTATCAGAGATTGACTGT
GTACTTTATGTGTGAGATTTCATGTTATTAAGGTTCCTATAGTACTTTGT
ATCATCTACACCCACGCCACAGAATAACAAAAAATTATTTTTAAAAGCCC
AGTTCATTTGTGAGACTATCACACGCTCATTTTCATAGACAAATTATTCT
TCTCTATAAACTTCCCCCTTATATTTATCTTTNAAACGTAACATCTGTTT
TTCTCCAGCCAAAGTTATTTCCTGTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGACGGGGAGAAAGGAGCCCGACAAGGAGCTT
CCTAGGGATTCGAGCTCAGGCCCTCCCTGCTTGATTTCTCCTGTGGCTCT
GCACAGCAACACCCAGGGCCTCTGCTGTACTAAGAACACCGCATCTTCTC
CTTCCAGCAGCAACCCTCAGAGAAGCCCAAAGCCTTCACTCCTCACGCCC
CAAGACAGTTTCTGCAACCTTGTTCTGTACACTTGGTGAGGATATGCTTA
TCTAACGGATCTGAGACCAGTCTGGGCTACAATATGGGAACCTACCTCAA
AAGATTTTTTAAAGAACCAACACCGAGCCGCCAGGTGACCATAGCTCCCT
ACACCAGGGAAACCAGTCTCAGTCTCTTCAGACTATCTACTTGAGAGTGT
GTGCTGGATCTATACAAAGGCTGATGGCGAGGTCCCATACAAAGCTTGCC
TTACCTGCTCTGCTCCCACCATGCTGATCGGCTTACACTTGAAGAGGTGG
GTGATGAATTTGGGAATGAACGAACTGTGGATAAAAAGTGACAAGTTAGG
CTTACTCTCTTTCTAGTAAAGTGTGCAGAAACTTGTTAAGGCTCTACTAC
CTCTCATAAGAAAGCCGAGAATGGAGGTGGACACTCACATCCCCCACGCC
ACCATTCACCTCATTCTCTTTCCTTCTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_l14.g1 MSMg01no157_l14.g1 CHROMAT_FILE:
MSMg01no157_l14.g1 PHD_FILE: MSMg01no157_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:07 2005
         (287 letters)



>mm_chr11_75875852_75876538
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacggggagaaaggagcccgacaaggagcttcctagggattcgagctcaggccctccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacggggagaaaggagcccgacaaggagcttcctagggattcgagctcaggccctccct 260

                                                                       
Query: 61  gcttgatttctcctgtggctctgcacagcaacacccagggcctctgctgtactaagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgatttctcctgtggctctgcacagcaacacccagggcctctgctgtactaagaaca 320

                                                                       
Query: 121 ccgcatcttctccttccagcagcaaccctcagagaagcccaaagccttcactcctcacgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgcatcttctccttccagcagcaaccctcagagaagcccaaagccttcactcctcacgc 380

                                                                       
Query: 181 cccaagacagtttctgcaaccttgttctgtacacttggtgaggatatgcttatctaacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaagacagtttctgcaaccttgttctgtacacttggtgaggatatgcttatctaacgg 440

                                                         
Query: 241 atctgagaccagtctgggctacaatatgggaacctacctcaaaaga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgagaccagtctgggctacaatatgggaacctacctcaaaaga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)