Query= MSMg01no157_m07.b1 MSMg01no157_m07.b1 CHROMAT_FILE:
MSMg01no157_m07.b1 PHD_FILE: MSMg01no157_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:10 2005
(318 letters)
>mm_chr11_49486689_49487406
Length = 718
Score = 607 bits (314), Expect = e-178
Identities = 314/314 (100%)
Strand = Plus / Minus
Query: 5 gaattcagagggaacttgtctggctgcttttgtttcaactgcaggcagtggagcagaagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcagagggaacttgtctggctgcttttgtttcaactgcaggcagtggagcagaagg 459
Query: 65 acgccgtgtggcactaaagtgaactgttgagtgttaacagttttatacagagactgagcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acgccgtgtggcactaaagtgaactgttgagtgttaacagttttatacagagactgagcc 399
Query: 125 attttggatgactcaaaattttatgagaagacatttaattgcttatgctgtttttaagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 attttggatgactcaaaattttatgagaagacatttaattgcttatgctgtttttaagag 339
Query: 185 gaaataaaattacatactgtttaaataaatgaattttttctttttaagaaattctctaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaaataaaattacatactgtttaaataaatgaattttttctttttaagaaattctctaaa 279
Query: 245 ggtcttgatatcttggaccttgtttttcctttaaggttttttgttttgtttgtttaatcg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggtcttgatatcttggaccttgtttttcctttaaggttttttgttttgtttgtttaatcg 219
Query: 305 taattgtaatgttg 318
||||||||||||||
Sbjct: 218 taattgtaatgttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_m07.g1 MSMg01no157_m07.g1 CHROMAT_FILE:
MSMg01no157_m07.g1 PHD_FILE: MSMg01no157_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:10 2005
(290 letters)
>mm_chr11_51960355_51961049
Length = 695
Score = 458 bits (237), Expect = e-133
Identities = 276/291 (94%), Gaps = 5/291 (1%)
Strand = Plus / Minus
Query: 1 ctgccctagcttcccttaataatgaagataaaccacaaaattaactaagccctgtcctcc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 491 ctgccctagcttcccttaataatgaagagaaaccacaaaattaactaagccctgtcctcc 432
Query: 61 aaaacttgtatttggtcagtgctttgtcacaccaacagaaagcaaactaattgtct---- 116
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 431 caaacttgtatttggtcagtgctttatcacaccaacagaaagcaaactaattgtcttatg 372
Query: 117 tacctcaggatggccttgaatccaccttactgctggaaagagttgtgaattcctgatccc 176
|| ||| |||||||||||||| |||||||| ||||||||||||| |||||||||||||||
Sbjct: 371 tagctctggatggccttgaattcaccttacagctggaaagagttttgaattcctgatccc 312
Query: 177 cccgccactacctcccaagcactcatgaagtaagaagaataactttgtatacacatgtct 236
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 311 ccagccactacctcccaagcactcatggagtaagaagaataactttgtatacacatgtct 252
Query: 237 cattttca-tttttatcaatgactacttacagctctcagtgttctcttctg 286
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cattttcattttttatcaatgactacttacagctctcagtgttctcttctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 695
Length adjustment: 9
Effective length of query: 281
Effective length of database: 686
Effective search space: 192766
Effective search space used: 192766
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
