BAC Information

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BAC

Clone NameMSMg01-157O15
Chromosome11 (Build37)
Map Location 113,492,040 - 113,492,349
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik, Slc39a11, Sstr2
Downstream geneCog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157O15.T7 (MSMg01no157_o15.b1)MSMg01-157O15.TJ (MSMg01no157_o15.g1)
ACCAG358267AG358268
length750748
length of high quality
(start - end)
321 (33 - 353)292 (61 - 352)
definitionCHROMAT_FILE: MSMg01no157_o15.b1 PHD_FILE: MSMg01no157_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:21 2005CHROMAT_FILE: MSMg01no157_o15.g1 PHD_FILE: MSMg01no157_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTCCAT
GCCCAAGGTTATTCAGCTCCACTCCTTCTATTGGGAGGCGAGTAGTAGTC
TGTAAAATGCACCATCAGGGATCACAAAGTCAATCCGAGGCATTTTTTTT
AAAGATTTATTTTACTTTTAATTATGTTCATGTGTTCATTTGTGTGCGTC
TGAGTGCAGATGTTCACAGAAGCCAGGAGAGGGCATCAGATCCATAGAGT
TGGAGTCCCAGGTTCTGATGAGCAGCCCGACGTGGGTCCTTAGAACCAAA
CCAAACTCTGCAAGAGTAGCAAGTGCTCTTAACTGCTGAGCTAGTCTTCC
AGTTTTGTATGTCCCACCCCCCACTGTATCCACTTCCCCTTTATCCATCG
GATCTATCTTCATAATGTTGAATTGGAGCTAAGAGTAACTTTTTGAACTA
AAACTGTGTTAACATTTACATTAAAAGATTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCCTCTTCCT
CATCGTCTTCTTCGTCTTGTCGACCTCCTCCTCCTCCTCAAAGTAAAGAG
ACCATTGTTTCTCGCGCCTTTTATATGAAGAACCACGAAAATAACCTCTT
TCTAAATTAAACTCCCCCCCTCGGAAACAAATCTTTAACTGTATATTATC
TTGGGTTGTTCTTATACGCGCCCTTTTCCTCCTCTGGCCCCACCCTCTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGTTCCTTACAGAAGGCGGATGGAAATCCCTGTCCTCTTG
CTGGCTACCAGGTGGCCACTGCTCGCAAGCCCCTGGTGACCACTCTTGGG
TTCTGCCCATGTGGCCACCTCCATGGGTAAGTCACAGCTGGCTGCTTGCT
TGTTCAAAGAGAGCACAGACTTGTATGTCTCCCTTATAGTTTCTTAGCCT
TCAAAAAGGAGCAAGTCTCTAGTCTAAGGGTTTGTCTGTCGTGTTAACTC
AAGGGTGAGGCGTACACACAGTCTGGTCATCTTGTGAGAGTGAATGAATC
TTTGTTAATCCCCACCCGCTAGCCATGTGAGAACAATGCCTGTCACATAA
AACACTTCCCTGAAAAACATCCACCTCTGAGATTTCTGGGGTTATGTGTC
TCATTGGTTGTGTGCTCGATCCAAAGCAGCGTTATAAGAAAGCACGGTAC
CCAACCAAGTCCCTCTCAAACACAACTCCAGCCTCACAAACCAGACAAGT
ACTTAGCAGTAAATACTCGCAAGCCAGGATGCTTCAGGAGCTTTGAGACA
GAGGCTTGTGCAGAGAGTCAAAGACTCAGGATCTCTCCACCCTAAATGGG
AGGTCTCTGTTACATCCCTCAGGAACCTATCTAGAAGAGGGTGGAGAAAG
ATTGTGAGAGCTAGAGGTGACAGGTGGCTCCGAAAAGACAACAGTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_o15.b1 MSMg01no157_o15.b1 CHROMAT_FILE:
MSMg01no157_o15.b1 PHD_FILE: MSMg01no157_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:21 2005
         (321 letters)



>mm_chr11_113492034_113492754
          Length = 721

 Score =  530 bits (274), Expect = e-155
 Identities = 303/320 (94%), Gaps = 14/320 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctccatgcccaaggttattcagctccactccttctattgggaggcgagtagt 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 316 gaattcatctccatgcccaaggttattcagctccaatccttctattgggaggcgagtagt 257

                                                                       
Query: 65  agtctgtaaaatgcaccatcagggatcacaaagtcaatccgaggcatttttttt----aa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||    ||
Sbjct: 256 agtctgtaaaacgcaccatcagggatcacaaagtcaatccgaggca--ttttttaaaaaa 199

                                                                       
Query: 121 agatttattttacttttaattatgttcatgtgttcatttgtgtgcgtctgagtgcagatg 180
           ||||||||||||||||||||||        ||||||||||||||||||||||||||| ||
Sbjct: 198 agatttattttacttttaatta--------tgttcatttgtgtgcgtctgagtgcaggtg 147

                                                                       
Query: 181 ttcacagaagccaggagagggcatcagatccatagagttggagtcccaggttctgatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttcacagaagccaggagagggcatcagatccatagagttggagtcccaggttctgatgag 87

                                                                       
Query: 241 cagcccgacgtgggtccttagaaccaaaccaaactctgcaagagtagcaagtgctcttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  cagcccgacgtgggtccttagaaccaaaccaaactctgcaagagtagcaagtgctcttaa 27

                               
Query: 301 ctgctgagctagtcttccag 320
           ||||||||||||||||||||
Sbjct: 26  ctgctgagctagtcttccag 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)