BAC Information

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BAC

Clone NameMSMg01-157O21
Chromosome11 (Build37)
Map Location 73,352,141 - 73,352,433
singlet/doubletsinglet
Overlap genenone
Upstream gene9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382
Downstream geneOlfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157O21.T7 (MSMg01no157_o21.b1)MSMg01-157O21.TJ (MSMg01no157_o21.g1)
ACCAG358279AG358280
length756754
length of high quality
(start - end)
326 (33 - 358)302 (63 - 364)
definitionCHROMAT_FILE: MSMg01no157_o21.b1 PHD_FILE: MSMg01no157_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:22 2005CHROMAT_FILE: MSMg01no157_o21.g1 PHD_FILE: MSMg01no157_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTTATC
TTATATTTTTTCAATTCTGTTCATTTACCTGCAAATTTCATTTTTCTTTA
TGTAACAGTGTTAACCACAGGTAAAGATTTTTCTGAATAGGATTCCATTT
GCAAAGAGTTAATGCTAACAGCTGACAAATGGGGACTCGTGAAATTAAAA
TGGCTTCTTTAAAGCAAAGAAAACGGTCAATTTATTGTAAGAGATGTCCA
CATAATGGAGGGAAAAAATATCTATAATTTTCAAGAACTCTAAAAGAAAA
GCATTAAATAATCAAACAGTCAAATCAAAATTGTCCATTGTACTGTGAGT
TCTTATATAATATCACACCCCCCCCGAAAAAGTTTTCAGCATTCTTAGCA
ATCAGAGAAATGCAAACCAAAGAGACTGACATTTCATCCTACGCCAGGCA
GAATGGCTAAGAGTCAGAAAAAGAGTGATGATAAATATTGTTGAAGATGT
GAGAAAAGGGGAAGCTCTTATTTGATGTTAGTGGTAATGAAAAATGGTAC
AGCCACTGTGAAAATTAATAGAACATGCCTCAAAAAGCTAGGAAATATAT
CTACTATCTAAACTAGCTATACCATTCCTGGCTGTATATCCAAAGAACTA
TATGTCTTGAGATATATATATATATATATATATATATATATATATATATA
TATATATATACATATATATATATATATATATATATTCCTCCCTGTTTGAT
GAAGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTCAGCAAAGGCAAGGCCTGGGGTAAAGTAACAATTCA
TATAAAAGCTGATGTCGATACAAATAAAACTAATGGTAGTTCTCTGAGAG
ATTACCTATGCAAGAAATAGAGTCTTCCATATGACCTATTACTTAAGTTG
AATTAATAAGAATCAGATACAGTATTTGAGATGAAAATATTAAAGAAGAA
AAATTAGGAATATTCCAGGAGCTGAAAAATCATAACTGAGTCACTAACAT
TTTTTCATATAAATTATTTTTATTAAAAATTTTCATAGAACACTCTTATT
AAGACTTTTTTATTTCCTCCCCCCCCTATTTTTTATTACGTATTTTCCTC
AATTACATTTCCAATGCTATACCAAAAGTCCCCAACACCCTCCTTCCCAT
TTCCCTACCCACCCATTCCCATTTTTGGCCCTGGCGTTCCCCTGTGCTGG
GGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCA
ACTAAGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGT
ACTGGTTAATTCATAATGTTGCACCTACAGGGTTGCAAATCTCTTTAGCT
CCTTGGATACTTTCTCTAGGTCCTCCATTGGGGGCACTGTGATCCATCCA
ATAGCTGACTTTGAGCATCCACTTATGTGTTTGCTAGGCCCCAACCTAGT
CTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_o21.g1 MSMg01no157_o21.g1 CHROMAT_FILE:
MSMg01no157_o21.g1 PHD_FILE: MSMg01no157_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:22 2005
         (302 letters)



>mm_chr11_73351997_73352699
          Length = 703

 Score =  427 bits (221), Expect = e-124
 Identities = 275/293 (93%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagcaaaggcaaggcctggggtaaagtaacaattcatataaaagctgatgtcgataca 60
           |||| |||||||||| |||||| |||||| |||||| |||||||||||||||||||||||
Sbjct: 437 ctcaccaaaggcaagacctgggataaagtcacaattaatataaaagctgatgtcgataca 378

                                                                       
Query: 61  aataaaactaatggtagttctctgagagattacctatgcaagaaatagagtcttccatat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 377 aataaaactaatggtagttccctgagagattacctatgcaagaaatagagtcttccatag 318

                                                                       
Query: 121 gacctattacttaagttgaattaataagaatcagatacagtatttgagatgaaaatatta 180
           |||||||||||||||||||||||||||| ||||||||||| |||| |||  |||| ||||
Sbjct: 317 gacctattacttaagttgaattaataagcatcagatacaggatttaagaaaaaaacatta 258

                                                                       
Query: 181 aagaagaaaaa-ttaggaatattccaggagctgaaaaatcataactgagtcactaacatt 239
           ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagaagaaaaacttaagaaaattccaggagctgaaaaatcataactgagtcactaacatt 198

                                                                
Query: 240 ttttcatataaattatttttattaaaaattttcatagaacactcttattaaga 292
           ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 197 ttttcatataaattatttttattaaaatttttcatagaacactcttactaaga 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 703
Length adjustment: 9
Effective length of query: 293
Effective length of database: 694
Effective search space:   203342
Effective search space used:   203342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)