BAC Information

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BAC

Clone NameMSMg01-158C01
Chromosome11 (Build37)
Map Location 36,500,564 - 36,682,924
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158C01.T7 (MSMg01no158_c01.b1)MSMg01-158C01.TJ (MSMg01no158_c01.g1)
ACCAG358426AG358427
length700731
length of high quality
(start - end)		250 (38 - 287)287 (66 - 352)
definitionCHROMAT_FILE: MSMg01no158_c01.b1 PHD_FILE: MSMg01no158_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:36 2005CHROMAT_FILE: MSMg01no158_c01.g1 PHD_FILE: MSMg01no158_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,500,564 - 36,500,810)(36,682,638 - 36,682,924)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
CCTCATGTGACCCACCAGCAGGATAGAACTGTAAGTAAAGGCAAAAACCA
GAAAAAGATATATCTACGGAAAACATCAACATCTGAGACTCAGAACCATG
CCTCAATGCTTTTCCCAACCCTGCAGTTTGTTATCTAGGGGTGATAACTG
ATGTAAGCCCCCTAGTGATTAGTTGCAATCTAGCAGCAGTGTATCTTTTT
CTAATGAGAACCAGATCCTTTCACTCCTCTGCTGGAGATAGCCAGCCAAT
TCCTTCCTGTCCCTGAATCTTTTTGAAAAATTCCCAAAGAACTTGTTCCT
GAAAAAACCCCTTTTTTATTTTAAAGGTTCCCCCTGGCCCCCACACATAA
CTCCCCCCCTTTTTTCCCCCCTCTTCAAAAAACCCGAAAACCCCCCCCCA
AAAATTTTCCTCTTCAAAAGGGGAATTACTTCTTTCCCCCCTCCCCAAAC
AAACATACGGCTTGCTTCACTACCCTTTGTGGGTGTGACACCTCCCCCCA
TGTGGGGTTGGTGCCCCCTCCCCCAAGAAAGGTGGTTTTTTCTTTCCCCC
CCCGCGGGTTCTGGTCCTCCTCTTTTTCCCCATCTTTTCCCTTCTTGCCT
GATAAACAAATTATCCTTCCCTTGCTGCTTTGGGCTACGGCCCTTACTCN


GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTCTCAGAGTGTTGAGAAGAAGACCCGGGTTATA
AACTGAGATTATGATCACAAAAAGTGCAAAGGGAAGGCCCAAACATCTCA
CTAAAAAAAGTTATTTAAAAGACTTAGTATTCCCTTACCTTAATGACCTA
ATAGGTTTTTAGATGATATTTCTCTCTGTATTTTAAATTTTACCAAATGT
CAGATGTAAATATTATATTTTCTGCTTGAATATTCACCTGTAAAAATATT
GAATCTCATATATTCTTCTGTTATATGGGTGCACAATGGTCAATTTAGTA
GTAAAACTATTAACCCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGCCCCCCAAAAAAAAATAATATCTTTCCTGGGTGCCTCCTCTTT
TTCCTCCTTAGTTTCCTTTTCGTCCCTCTCCCCCCTTCCCCTTTCGATCC
ACTCCCCTTACCCTTTCTCCATTTCCCCCTCTCTCTTATCCTTATATTTT
TTATTTTCTTTCGTCTACATTTCACCCACACCTTTTTCCTTCCCTCCTTT
ACACTTCACCTCTTTTCCTTTCACTTTTGCTTTTCATTTTTTATCACCTC
CCGTCCTCCATTAGTCTCTTACCTCCACTCTCACTCCATCTCCCTCTCTC
CTCCTCTTTCCCCTCCCCTCCCCCCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_c01.b1 MSMg01no158_c01.b1 CHROMAT_FILE:
MSMg01no158_c01.b1 PHD_FILE: MSMg01no158_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:36 2005
         (250 letters)



>mm_chr11_36500361_36501010
          Length = 650

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattcctcatgtgacccaccagcaggatagaactgtaagtaaaggcaaaaacca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattcctcatgtgacccaccagcaggatagaactgtaagtaaaggcaaaaacca 263

                                                                       
Query: 64  gaaaaagatatatctacggaaaacatcaacatctgagactcagaaccatgcctcaatgct 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaaaagatatatctagggaaaacatcaacatctgagactcagaaccatgcctcaatgct 323

                                                                       
Query: 124 tttcccaaccctgcagtttgttatctaggggtgataactgatgtaagccccctagtgatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcccaaccctgcagtttgttatctaggggtgataactgatgtaagccccctagtgatt 383

                                                                       
Query: 184 agttgcaatctagcagcagtgtatctttttctaatgagaaccagatcctttcactcctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 agttgcaatctagcagcagtgtatctttttctaatgagaaccagatcctctcactcctct 443

                  
Query: 244 gctggag 250
           |||||||
Sbjct: 444 gctggag 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no158_c01.g1 MSMg01no158_c01.g1 CHROMAT_FILE:
MSMg01no158_c01.g1 PHD_FILE: MSMg01no158_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:36 2005
         (287 letters)



>mm_chr11_36682438_36683124
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcagagtgttgagaagaagacccgggttataaactgagattatgatcacaaaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tctctcagagtgttgagaagaagacccgggttataaactgagattatgatcacaaaaagt 428

                                                                       
Query: 61  gcaaagggaaggcccaaacatctcactaaaaaaagttatttaaaagacttagtattccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcaaagggaaggcccaaacatctcactaaaaaaagttatttaaaagacttagtattccct 368

                                                                       
Query: 121 taccttaatgacctaataggtttttagatgatatttctctctgtattttaaattttacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taccttaatgacctaataggtttttagatgatatttctctctgtattttaaattttacca 308

                                                                       
Query: 181 aatgtcagatgtaaatattatattttctgcttgaatattcacctgtaaaaatattgaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatgtcagatgtaaatattatattttctgcttgaatattcacctgtaaaaatattgaatc 248

                                                          
Query: 241 tcatatattcttctgttatatgggtgcacaatggtcaatttagtagt 287
           ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcacatattcttctgttatatgggtgcacaatggtcaatttagtagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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