BAC Information

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BAC

Clone NameMSMg01-158C04
Chromosome11 (Build37)
Map Location 107,670,420 - 107,850,907
singlet/doubletdoublet
Overlap geneCacng5, Prkca
Upstream geneCcdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158C04.T7 (MSMg01no158_c04.b1)MSMg01-158C04.TJ (MSMg01no158_c04.g1)
ACCAG358432AG358433
length721712
length of high quality
(start - end)
317 (34 - 350)187 (65 - 251)
definitionCHROMAT_FILE: MSMg01no158_c04.b1 PHD_FILE: MSMg01no158_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:37 2005CHROMAT_FILE: MSMg01no158_c04.g1 PHD_FILE: MSMg01no158_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,850,595 - 107,850,907)(107,670,420 - 107,670,606)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGACA
GCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAAAGTGTAAGAGA
AATCTACAACAGTTTGTGTGTTTCCATGGTTGGGCAGCATCGGCCTGTCT
ACCCTGGAATGTCATAAGTAAATAGACCCTTCCAAGGGTCTTGAACTTGA
CTGTAAAGTTCAGTGGCATCGCTATGTTACACTTCATAGAGCTTTGATAA
ATATATTCATCAAAGCCATACTTGCACTAACTCATGGAAACACTTTTATT
GAAGACACATTTACAAAACAAGTACGAATCAGAACATTTAAAGTGGGGCA
TATTTTTGTGTACCCCCCCCCACCCTCTCCAGAGGTTACCCAAAGGACCC
CTGGGAGACCTACGCTCACACTGAAATGTGGGTCTTAGAGCTCAGAGAAA
CCACAGCCTCTTGTCAAAATTTCCAGGCAGAGGCATGGTATGAGAGCCAA
CAAGCAATGACAGACTCACCACAACTCTGATTTTTTGGGTTGGTTTTTTT
TTTTTTTTTTTTTAAAACTAGAGGGTCTTGGGTACACATCATGTTAGCAA
TGGAAGCGTACCGGGCGAAGTTAACTGAAAACCTTTGCCACTGGCTCCCC
CCAAAAGGCAAAATTTGTACCAACTCCCGTTTGCCCCCAATCGGCTTTAA
CTTAGTTTCAAACACTGCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGGGCTTCCGGCAGAGCAAACTCCACATAGTTCTC
GGTGACCACAGCTCTCAAAGCTCCTTGAAGCTATGAAAATCGAGAAAAAA
CGGGATTGCTTACTGCAGTGTTTTCTCGGTTGGACACAAAGGATTAGCTT
AGGGAAATGGCGTGAAGTGTGTGCCCTGATGCCTGGTGTATAGCCACGAG
GTGTTGGCTGGAAAGGCAGTCTCACAGGGGAGAAGCCTTGGGGCCACCAT
AGGCTGACTTCAGCTTAGCTGACCTGCTGCAATCTCACCCAAAGCCATGG
GGAGTTTTTGACCCCCCCCCCCCTGGGGACTGACATGTTTTGATTAACCT
GACTAGACACGCCCGCCAAAAGATGAGCGTGTCAAAGATGATGGAGCCCA
GTGTATCAAAATAAAGGTTTACTGAAGGCCTGGGCTGAAAGGGCTCAGTT
CTGCTGGGGAGAGATGAGGGAAGCCACACACTTGACCCATCCTTTTTAAG
AGTCTGTTCTTCATCTTCCCTCGGGTTTCCCATACCAGCCTAGGTCTCCT
AGGTACTGACTGACCTGTTCCAAAAAAAGTGCCTAACCACCCAAACTGAT
CCTGGCTGCCTCCATCCTGTGGTCCTTCCCCCTTCCCTTAAGGGATGGGG
CACCCAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_c04.b1 MSMg01no158_c04.b1 CHROMAT_FILE:
MSMg01no158_c04.b1 PHD_FILE: MSMg01no158_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:37 2005
         (317 letters)



>mm_chr11_107850215_107850931
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaaaaaaagtgtaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaaaaaaagtgtaag 634

                                                                       
Query: 65  agaaatctacaacagtttgtgtgtttccatggttgggcagcatcggcctgtctaccctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 agaaatctacaacagtttgtgtgtttccatggttgggcagcatcggcctgtctaccctgg 574

                                                                       
Query: 125 aatgtcataagtaaatagacccttccaagggtcttgaacttgactgtaaagttcagtggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 573 aatgtcataagtaaatagacccttccaagggtcttgaacttgactgtcaagttcagtggc 514

                                                                       
Query: 185 atcgctatgttacacttcatagagctttgataaatatattcatcaaagccatacttgcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atcgctatgttacacttcatagagctttgataaatatattcatcaaagccatacttgcac 454

                                                                       
Query: 245 taactcatggaaacacttttattgaagacacatttacaaaacaagtacgaatcagaacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taactcatggaaacacttttattgaagacacatttacaaaacaagtacgaatcagaacat 394

                        
Query: 305 ttaaagtggggca 317
           |||||||||||||
Sbjct: 393 ttaaagtggggca 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no158_c04.g1 MSMg01no158_c04.g1 CHROMAT_FILE:
MSMg01no158_c04.g1 PHD_FILE: MSMg01no158_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:37 2005
         (187 letters)



>mm_chr11_107670220_107670806
          Length = 587

 Score =  308 bits (159), Expect = 2e-88
 Identities = 180/187 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcttccggcagagcaaactccacatagttctcggtgaccacagctctcaaagctcc 60
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 201 cagggcttccagcagagcaaactccacatagctctcggtgaccacagctctcagagctcc 260

                                                                       
Query: 61  ttgaagctatgaaaatcgagaaaaaacgggattgcttactgcagtgttttctcggttgga 120
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagctatgagaatcgagaagaaacgggattgcttactgcagtgttttctcggttgga 320

                                                                       
Query: 121 cacaaaggattagcttagggaaatggcgtgaagtgtgtgccctgatgcctggtgtatagc 180
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 321 cacaaaggattagcttagggaaatggcgtgaagtgtgtgccctgacccctggtgtatagc 380

                  
Query: 181 cacgagg 187
           |||||||
Sbjct: 381 cacgagg 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)