BAC Information

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BAC

Clone NameMSMg01-158D05
Chromosome11 (Build37)
Map Location 61,694,773 - 61,695,041
singlet/doubletsinglet
Overlap geneAkap10
Upstream geneGtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
Downstream geneD630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158D05.T7 (MSMg01no158_d05.b1)MSMg01-158D05.TJ (MSMg01no158_d05.g1)
ACCAG358480AG358481
length733735
length of high quality
(start - end)
272 (46 - 317)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no158_d05.b1 PHD_FILE: MSMg01no158_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:41 2005CHROMAT_FILE: MSMg01no158_d05.g1 PHD_FILE: MSMg01no158_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGATTCAGTCAGCTTTGACAGGTAACATGGCTTTCACAAATAGC
AACTCCAGGGTTTTGACTCAGAATATCTTCGGCAAGAGTTTCACACACAC
ACAAACACTCAGCAAAAGTTTTTATAGTTCAATTCCTTTTGCGTTTTTGT
CATTTATTGGCCAGCAATTTTGATTTGGCTTTTGAAACCCTGGTGGACAG
AGCACTGTTGTAGTAAACATTTAATTTCAACCAAGGGTTTCTGCCCTGCC
TTTGATTATTCAGTTCCCAGATAAAAGACACACACAACTTTCGTATTTAT
AATAAGACTTTATATTTTTTTAACTACCCACCTAGCTACCCTCTAAGCTA
TTTGAATTTACTTCTTTATCCCCCCCCCAGAAACAAACTTGTATCTCGCG
GGGCCTGGACACACGGCTCAGTGTCCAACAGCACTGACCCTCCTTCCACA
CGTCCCGAGTTCCCCTCCTACCATCCACCCGGTGTCCCACAACCATCTCT
AACGACACCTGATGCCCTCTTCGGGTGTGCCTCGACCACGCTATTGCGTA
CCCCCCTTATGCCACATAAATTTACCACAAAACACCTATGCTTCCACCCC
GGGCTTCCTTCTTCCTTTCTCGGTTCGCCCCCCCCTTTTGGGCCATGCTC
CTCCTCGATCCCCCCGACTCATCGTCCCTCTTG
CTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGTTCAAGGCCAGCCTGGT
CTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCT
CGGAAAACCAAACAAACAAATAAAAATTACACACACACATATGCTGATTG
GACTTTCAGGTAGAGAAAAGACACACCTGCCCAGTGTTCTCAGGCAAGAG
AGAGAGAGGAGAGAGAGGAGAGAGAGGGAGAGAGAGAAAACACGAAATCA
TTTAGGCACCTTGTTTTAGCCAGAAGTTTTTCTGAACTATTTCATGCACT
TCTTTCTTTGCCTCATTTTTTAACACCACCCCCTGCCAAGAGACAGCATA
GCAGCCAACAAAGCCCTTACCACCCCCAAAGGACTCTAGTAAAAACAGGC
TCATTGTGTCTTCAGAGGATAAAACAGGAAATCTTATAAACAGATCAAGG
TTTGATGTGAAAGAACCACGTAACTAGGAGGAAGCTATCGTTCCAAACAA
GCAGCTCAGTCGCTGGTCAACAGGAGAAATGAGCTCCTGAGAAGTCTGGG
AGGAGAGAGCCAATTTGCCCAGGACACCGTTATGCAAGGAGCCAAGTGCT
TATACCAAGACAAGAGCCAAGTGCAGTAACTCCAAACTGGCCTGCACAGT
AAGTGCCAATCTCACTAAAATAAGAAGTTACAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_d05.b1 MSMg01no158_d05.b1 CHROMAT_FILE:
MSMg01no158_d05.b1 PHD_FILE: MSMg01no158_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:41 2005
         (272 letters)



>mm_chr11_61694630_61695303
          Length = 674

 Score =  489 bits (253), Expect = e-143
 Identities = 265/269 (98%), Gaps = 2/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctagattcagtcagctttgacaggtaacatggctttcacaaatagcaactccag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggaattctagattcagtcagctttgacaggtaacatggctttcacaaatagcaactccag 353

                                                                       
Query: 64  ggttttgactcagaatatcttcggcaagagtttcacacacacaca-a-acactcagcaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 352 ggttttgactcagaatatcttcggcaagagtttcacacacacacacatacactcagcaaa 293

                                                                       
Query: 122 agtttttatagttcaattccttttgcgtttttgtcatttattggccagcaattttgattt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agtttttatagttcaattccttttgcgtttttgtcatttattggccagcaattttgattt 233

                                                                       
Query: 182 ggcttttgaaaccctggtggacagagcactgttgtagtaaacatttaatttcaaccaagg 241
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 232 ggcttttgaaaccctggtggacagagcactgttgtagtaaatatttaatttcaatcaagg 173

                                        
Query: 242 gtttctgccctgcctttgattattcagtt 270
           |||||||||||||||||||||||||||||
Sbjct: 172 gtttctgccctgcctttgattattcagtt 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 674
Length adjustment: 9
Effective length of query: 263
Effective length of database: 665
Effective search space:   174895
Effective search space used:   174895
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)