BAC Information

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BAC

Clone NameMSMg01-158G03
Chromosome11 (Build37)
Map Location 3,047,332 - 3,047,619
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604
Downstream geneLOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158G03.T7 (MSMg01no158_g03.b1)MSMg01-158G03.TJ (MSMg01no158_g03.g1)
ACCAG358609AG358610
length710709
length of high quality
(start - end)
493 (36 - 528)289 (64 - 352)
definitionCHROMAT_FILE: MSMg01no158_g03.b1 PHD_FILE: MSMg01no158_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:54 2005CHROMAT_FILE: MSMg01no158_g03.g1 PHD_FILE: MSMg01no158_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCAT
TTTTCAAGTCGTCACGTGGATGTTTCTCATTTTCCATGATTTTCAGTTTT
CTTGCCATATTCCACTGTCCTACAGCGGACATTCCAAAATTTTCCACCTT
TTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTT
TCTGTGATTTTCAGTTTTCTCGCCATATTCCAGGTCCTACAGTGTGCATT
TCTCATTTTTCACGTTTTTCTGTAATTTCGTCATTTTTCCAGTGGTCAAA
TGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATG
TCCTACGGTGGACATTTCTAAATTATCCAACTTTTTCAGTTTTCCTCGCC
ATATTTCCCGCCCTACAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTT
TCTCGCCATATTCCAGGTACTACAGTGTGCATTTCTCTTTTTTCACTTTA
ATCAGTGATTTTGTCATTTTTCAAGTGGCCAAGTGGATGTTTCTTATTTT
CCATGACTTTCCGTTTTCTTGTCATATTCTATGCCCTACAGCGGGAATTC
CAAAATTTTCCACATTTTCATTTTTCCTCGCCATATTTTATGCCCCAAAG
TCTGGATTTCTCATTTTCCGCGAATTTTCAGTTTTTTCGTCCCATTCCTT
GCCCTACAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAACTCAAGTCCTCTAGAAGAGAGCAGTCAGTGCTCTT
AACTGCTGAGTCATCTCTCTATTCCCCTAAAAATAATTTTTTTTTTAAAA
AATGTGCAGTGAGAATTTCTGTTTCTTAAAAAACCCAGATATGTTATATA
AATATGTTTTTGTTTTAACCCCAGGCATGAGGTAAGCGGCTACTTCACAG
CAGGTGGTTATGATGTTCCTTTTACAGTAGCCAGCCACAGACTTGGGATT
CTGGAGATGGCCTGCTGCTGCTGGTCCCTGCTGGTCCCTGCGGCTGTGTT
TGCTATTGCTCGCCTCGCTGGACATTTTGATAACAAAGATTGGACTGGCC
CCAAGCACACCAACCCCCTGACCCCTGATCGGCAGGAAGTAGCTTACAGA
GGTTTTCGACCCCCCTTTCCCTCTGGCCTTCTTTCTCTCTTACCTAGTGT
TGGGGGTTGTAAAGGTTTACGGTGGAGCAAGGGTTGGAAGAGAGGTAGAG
ACATTATAATTCAATAAAATAGTTGTTTTTTTATTTTTAAGCCACCAAAA
ATGACTCTGGGTGCTGAGTGTCATTACAGGTATGGTTCATCGCCTAACTG
CATTCTTGTCCCTGCGGACTCAAATTCAGTCTCAGGACTCTCTTGTTGCT
TCACAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_g03.g1 MSMg01no158_g03.g1 CHROMAT_FILE:
MSMg01no158_g03.g1 PHD_FILE: MSMg01no158_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:54 2005
         (289 letters)



>mm_chr11_3047131_3047819
          Length = 689

 Score =  480 bits (248), Expect = e-140
 Identities = 278/294 (94%), Gaps = 11/294 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcaagtcctctagaagagagcagtcagtgctcttaactgctgagtcatctctctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aactcaagtcctctagaagagagcagtcagtgctcttaactgctgagtcatctctctatt 261

                                                                       
Query: 61  cccctaaaaataatttttttttt-----aaaaaatgtgcagtgagaatttctgtttctta 115
           |||||||||||||      ||||     |||||||||||||||||||||||  |||||||
Sbjct: 262 cccctaaaaataa------ttttaaaaaaaaaaatgtgcagtgagaatttccatttctta 315

                                                                       
Query: 116 aaaaacccagatatgttatataaatatgtttttgttttaaccccaggcatgaggtaagcg 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaaaacccagatatgttatataaatatgtttttgttttaaccccaggcatgaggtaagcg 375

                                                                       
Query: 176 gctacttcacagcaggtggttatgatgttccttttacagtagccagccacagacttggga 235
           |||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||
Sbjct: 376 gctacttcacagcaggtgattatgatgttccttttacagtagccagctgcagacttggga 435

                                                                 
Query: 236 ttctggagatggcctgctgctgctggtccctgctggtccctgcggctgtgtttg 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttctggagatggcctgctgctgctggtccctgctggtccctgcggctgtgtttg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)