BAC Information

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BAC

Clone NameMSMg01-158N18
Chromosome11 (Build37)
Map Location 89,697,704 - 89,697,973
singlet/doubletsinglet
Overlap genenone
Upstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158N18.T7 (MSMg01no158_n18.b1)MSMg01-158N18.TJ (MSMg01no158_n18.g1)
ACCAG358956AG358957
length815750
length of high quality
(start - end)
274 (42 - 315)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no158_n18.b1 PHD_FILE: MSMg01no158_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:28 2005CHROMAT_FILE: MSMg01no158_n18.g1 PHD_FILE: MSMg01no158_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGATACTACCAACAAGCAGTCACACATAGGGGGTGGGGGTGACAATAC
AAACGAGGCTGTTTTCACCCACAACTTGAGATAGCTGTGCATAGAGCTGA
GTATTAATTCATGGGTGCTGAGGACTCTGTTTCCTTGGGAAAGTGTCTGT
TTATATCAGCTACGTCTACAGTAAGTATTAACCCGCTTTGCACTTTCAGA
CGAGCCCCCATTTCGGCAACAAATATTCTGGTCTTCCTTGCTTTTTGTAA
AGTAGAAATCATAGTCTCTATTGAGGTAGAGAACTTAGTGGTGATATACA
TAGATGTTTTTTTTGCCCCCCCCCCCCCCCCCCCTTAATATTTTTTGTTT
TTTATTTATTTACCCCCCCCCTCTAAAAAAAAAAAAATTTTTTTGGTGGT
ACGTTTTTTTTTTCTTTCTTCTCTCTCACACCCTAATATTTCCTATCTTC
TTCTCCATTTTACCTTTTCCTTATTTACTCCAGTTCTACACTTCATTCAT
AATATTTACTTCCCCCCCCTCATTATTATCTCTTTTTATTTCTTCCTTTA
TAATTTATTCCCTTTCCCCTTCTTCACATACTCCATTACTGTCTCTCTCT
TTTATCCTCCCCCTCTCCTCCCTCTTCTTATTCTCTATAACCCCCCCCCA
ATATATACTCCCCTTTCTCTTTGTTCATTCTACTACCTCACCCCTTTCCT
AATATTTATTTATCCCGTTCTCTCGTCTCCTTTTTTGTCCCCTCCTTATC
TCTATCCCCCCCTCA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAAAATCAAATAACCCTATTAAAAAATA
GGGTACAGAGCTAAACAAAGAATTCCCAACTGAGGAATACCGAATGGCTG
AGAAGCACCTGAAAAACAGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAGCAACCCTGAGATTCCATCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGAAGATGCTGGTGAGGATGTAGACAAAGAGGAA
CACTCCTTCATTATTGGTGGGATTGCAAGATGGTATAACCACTCTGGAAA
TCAGTCTGTTTTTTCCTCACACCACCTGGACATAGTACTACCAGAAGATC
CAGCAATTCTTCCCCTGCGCATATACCCAGAAGTAGTTCCAACTTATAAT
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAA
AAGCTGGAAAGAACCCAGATGTCCCTCAGCAGAGAAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCTGCCTATTCTTCTATAAGA
GTCCCCAAGCTCTAACGACTGTTTGGCTGTGGATGTCTGCATTTGTCTGA
GTCAGCTGCTGGGTGGAGCCTCTCAGAGGACAGCCATGCTAGGCTCCTGC
CTGCAAGTGTAACAGAGCGTCATTAATAGTGTCAGGTTTTGCTGCTTGCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_n18.b1 MSMg01no158_n18.b1 CHROMAT_FILE:
MSMg01no158_n18.b1 PHD_FILE: MSMg01no158_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:28 2005
         (274 letters)



>mm_chr11_89697501_89698174
          Length = 674

 Score =  468 bits (242), Expect = e-136
 Identities = 263/274 (95%), Gaps = 8/274 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagatactaccaacaagcagtcacacatagggggtgggggtgacaatacaaac 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagatactaccaacaagcagccacacatagggggtgggggtgacaatacaaac 263

                                                                       
Query: 64  gaggctgttttcacccac----aacttgagatagctgtgcatagagctgagtattaattc 119
           ||||||||    |  |||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaggctgt----aaacactaagaacttgagatagctgtgcatagagctgagtattaattc 319

                                                                       
Query: 120 atgggtgctgaggactctgtttccttgggaaagtgtctgtttatatcagctacgtctaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgggtgctgaggactctgtttccttgggaaagtgtctgtttatatcagctacgtctaca 379

                                                                       
Query: 180 gtaagtattaacccgctttgcactttcagacgagcccccatttcggcaacaaatattctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtaagtattaacccgctttgcactttcagacgagcccccatttcggcaacaaatattctg 439

                                             
Query: 240 gtcttccttgctttttgtaaagtagaaatcatag 273
           ||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcttccttgctttttgtaaagtagaaatcatag 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)