Query= MSMg01no159_d05.b1 MSMg01no159_d05.b1 CHROMAT_FILE:
MSMg01no159_d05.b1 PHD_FILE: MSMg01no159_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:53 2005
(684 letters)
>mm_chr11_83728404_83729487
Length = 1084
Score = 1178 bits (609), Expect = 0.0
Identities = 661/681 (97%), Gaps = 6/681 (0%)
Strand = Plus / Plus
Query: 5 gaattctgctttaaggtttttatctttgtatggttaatcatggacaacttatcactatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattctgctttaaggtttttatctttgtatggttaatcatggacaacttatcactatcc 258
Query: 65 ttgacgtagtctgggccctactatctgtacatccaagctattgagaagaatacccggaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttgacgtagtctgggccctactatctgtacatccaagctattgagaagaatacccggaag 318
Query: 125 caggaagagctgcctgaagaagaactggagatggttctcaactgaaattttgtccatttc 184
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 319 caggaagagctgcctggagaagaactggagaaggttctcaactgaaattttgtccatttc 378
Query: 185 cttggagagcacccatctcattctgcctctcccttgt--gttataaggaaacacaggcca 242
||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct: 379 cttggagagcacccatctcattccgtctctcccttgcaagttataaggaaacacaggcca 438
Query: 243 tacgggttgggtccttgtttgtttgtttgtttgttt----tgttgttcttgtttagatta 298
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 439 tacgggttgggtccttgtttgtttgtttgtttgtttgttttgttgttcttgtttagatta 498
Query: 299 tttttatcttatatgtgtgagtgttttgcctgcagatatgtgtgtgcagcacgtgtgctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttttatcttatatgtgtgagtgttttgcctgcagatatgtgtgtgcagcacgtgtgctc 558
Query: 359 ctggcatctagagaagtcagaagagggcatttgatcccctggaactggaattagggagag 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 559 ctggcatctagagaagtcagaagagggtatttgatcccctggaactggaattagggagag 618
Query: 419 ttgtgagccgccatgtgggtgctgggaattcaacccggcttctctagaagaagagaaagt 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 619 ttgtgagccgccatgtgggtgctgggaattcaacccgacttctctagaagaagagaaagt 678
Query: 479 gttcttaatggctgggctctcagcccagcaacgtgctctattgtctctacaactccatgg 538
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 679 gttcttaatggctgggctctcagcccaggaacgtgctctattgtctctacaactccatgg 738
Query: 539 cgcctgttgcaaggaggttctctgcgaagacttgtatgcattaatgcatgaatgaataaa 598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 739 cgcctgttgcaaggaggttctctgtgaagacttgtatgcattaatgcatgaatgaataaa 798
Query: 599 catatgggttttatacatacatgcataagttaatattttaaagcactgatctattaaatt 658
|| ||||||||||||||||||||||||||||||||||| ||| | |||||||||| ||||
Sbjct: 799 caaatgggttttatacatacatgcataagttaatatttaaaatcgctgatctattcaatt 858
Query: 659 catagccaacttctacagagt 679
|||||||||||||||||||||
Sbjct: 859 catagccaacttctacagagt 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_d05.g1 MSMg01no159_d05.g1 CHROMAT_FILE:
MSMg01no159_d05.g1 PHD_FILE: MSMg01no159_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:53 2005
(285 letters)
>mm_chr11_83840692_83841376
Length = 685
Score = 536 bits (277), Expect = e-157
Identities = 283/285 (99%)
Strand = Plus / Minus
Query: 1 ctcccttctgctcagagggtcgcaggttaactggaggactagtaaatgacttagaataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctcccttctgctcagagggtcgcaggttaactggaggactagtaaatgacttagaataca 426
Query: 61 gccaggcctctcatgaacttaaatgcttcctggaaaatgctgcagcagccacgcagactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 425 gccaggcctctcatgaacttaaatgcttcctggaaaatgctgcagcagccatgcggactg 366
Query: 121 catgcatgtgtgcgcactctggccttcttcatcggctttggtagattgcaacacccagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catgcatgtgtgcgcactctggccttcttcatcggctttggtagattgcaacacccagag 306
Query: 181 gggatctagtcatttgtttattcagagtagagctactcataacatggagaaaaatgagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggatctagtcatttgtttattcagagtagagctactcataacatggagaaaaatgagtc 246
Query: 241 caaggaaaataattatagtggtgaacggacggtcacatgatggtc 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 caaggaaaataattatagtggtgaacggacggtcacatgatggtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
