BAC Information

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BAC

Clone NameMSMg01-159K21
Chromosome11 (Build37)
Map Location 57,429,428 - 57,582,573
singlet/doubletdoublet
Overlap geneGalnt10
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
Downstream geneSap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K21.T7 (MSMg01no159_k21.b1)MSMg01-159K21.TJ (MSMg01no159_k21.g1)
ACCAG359554AG359555
length759760
length of high quality
(start - end)
323 (40 - 362)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no159_k21.b1 PHD_FILE: MSMg01no159_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:27 2005CHROMAT_FILE: MSMg01no159_k21.g1 PHD_FILE: MSMg01no159_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,429,428 - 57,429,744)(57,582,282 - 57,582,573)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGCTTGAGCCACCAACTTGCTCTCACCGGTCGCTGTTTAAAGCTTGCGA
GATAGACAGGGAGGCTGAACTCCTTCCTATGCACCGCGATCTCCGAAACT
CTGAGAGCTGGGAGTCCCATTCCAGCCGCTTCCCTGGAGGCTCTGCTGTG
AGGAAACGCTCGCTGCTCATTAATCACCAGCCAACTGTAGCCTGTCAGCC
TTTGGAGGATTCCCTGCCAGGCCCAACACTTGTCTTCCCTCCTTTGCTTC
TTCAGCTTCTACGGTGTGTCTATCAACCATCGGTGTCCCCGGCTCTGTCT
CGGCCTCCTTTTTGTTCACCCGCCCCCCCCTCTGATTGCTCACCCTGCCT
CTGCCTTCCCGCGCCCCCCCTGTACCAGACTGCCTGCTTTCTTGTTCTCT
TCCCTGGGCATGCTACAGCATAGCGCCAAGGTTGAGGCTGGGCTCTAGAT
CTCTCCTGATTCCTGCTTGCCTCCATTTTAAGGATGCTTTTTATGGTAGC
TTCAAGTACAGGAAGCTGCTGGAGGTGTTTGGGAGGCAACCTCCAAAGAG
CACCTTGCTCTCCCCAGCATTCCTCACTTTCCCCACCCCCCAATCCTACC
ACACACTGTGGGGTTGTTCTTTTACTCCCCAAAAAATTACATAACAGTGA
CTGTAACTCTGTGTTATTTTGTTTGATCTGTGCTTGCCCTTTCATTGTTT
TTCCCCCCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCTTGAGTTTTTAAACAGCCCAAACTGT
GCAAGAGGGAGCAGGCATGTCCTGAGTTCCCAAGCTGGAAGGTAAGCAGG
CAGAGCGTGGAATGCTATAGGCTGAGTGATTCAAGACAGTAAGCGGGGCC
TCCACCCAGTTCATGTTGTGGTCTCTTTTAAGCCTGGGCGTCACTGTGCC
CAATCTACTACAAGGATCCCAGTGCTGGTCTGAGCCCCCCATGTTGTTCC
CACAGGGAGCTCTGAGCGCTTCAGGAGGGTCACTGTGGGGTCAATGATCT
GTCCCGAGGAGCATTTGGTCCGTCCCGGGCAGCCTATGGCTCAGGGTCAA
GGATTAAGGATCATGCCCACGACGTGCAAAGAAAAAAGGAGGGCCAGAGA
AGGGTCGGGCCCACATTTCATCAAGCCATACAGAATTCTTCACAAAACAG
CATTTGTGCCTGCCTTTTTAATCTGAAGTCATGACCTCCAGGTGGGTAGG
TGAGTGGTGAAATGTNTTCTTTTNTTTTTCTCCCGAATATATATATATTT
TTTTTACTATTCCTTTCTCTTACTGTTATTCTTTTTACCCATTCATTACA
TTTTTCTTCACTTCTCCTCTTTATTCTTTAGTCTTTTTTTTCTTTTCCCC
CTTTTCTCTTTTATTTCTCTCCCTTATTCTCCCCATTTTTTTTTTTATTT
TTCCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k21.b1 MSMg01no159_k21.b1 CHROMAT_FILE:
MSMg01no159_k21.b1 PHD_FILE: MSMg01no159_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:27 2005
         (323 letters)



>mm_chr11_57429225_57429947
          Length = 723

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggcttgagccaccaacttgctctcaccggtcgctgtttaaagcttgcgaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggcttgagccaccaacttgctctcaccggtcgctgtttaaagcttgcgaga 263

                                                                       
Query: 64  tagacagggaggctgaactccttcctatgcaccgcgatctccgaaactctgagagctggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagacagggaggctgaactccttcctatgcaccgcgatctccgaaactctgagagctggg 323

                                                                       
Query: 124 agtcccattccagccgcttccctggaggctctgctgtgaggaaacgctcgctgctcatta 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtcccattccagccgcttccatggaggctctgctgtgaggaaacgctcgctgctcatta 383

                                                                       
Query: 184 atcaccagccaactgtagcctgtcagcctttggaggattccctgccaggcccaacacttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcaccagccaactgtagcctgtcagcctttggaggattccctgccaggcccaacacttg 443

                                                                       
Query: 244 tcttccctcctttgcttcttcagcttctacggtgtgtctatcaaccatcggtgtccccgg 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tcttccctcctttgcttcttcagcttctacgatgtgtctatcaaccatcggtgtccccgg 503

                            
Query: 304 ctctgtctcggcctcct 320
           |||||||||||||||||
Sbjct: 504 ctctgtctcggcctcct 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_k21.g1 MSMg01no159_k21.g1 CHROMAT_FILE:
MSMg01no159_k21.g1 PHD_FILE: MSMg01no159_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:27 2005
         (294 letters)



>mm_chr11_57582082_57582775
          Length = 694

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttgagtttttaaacagcccaaactgtgcaagagggagcaggcatgtcctgagttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agcttgagtttttaaacagcccaaactgtgcaagagggagcaggcatgtcctgagttccc 433

                                                                       
Query: 61  aagctggaaggtaagcaggcagagcgtggaatgctataggctgagtgattcaagacagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagctggaaggtaagcaggcagagcgtggaatgctataggctgagtgattcaagacagta 373

                                                                       
Query: 121 agcggggcctccacccagttcatgttgtggtctcttttaagcctgggcgtcactgtgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 372 agcggggcctccacccagttcatgttgtggtctcttttaagcctgggagtcactgtgccc 313

                                                                       
Query: 181 aatctactacaaggatcccagtgctggtctgagccccccatgttgttcccacagggagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aatctactacaaggatcccagtgctggtctgagccccccatgttgttcccacagggagct 253

                                                               
Query: 241 ctgagcgcttcaggagggtcactgtggggtcaatgatctgtcccgaggagca 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctgagcgcttcaggagggtcactgtggggtcaatgatctgtcccgaggagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)