BAC Information

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BAC

Clone NameMSMg01-160D12
Chromosome11 (Build37)
Map Location 79,306,468 - 79,306,672
singlet/doubletsinglet
Overlap geneNf1
Upstream geneA830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
Downstream geneOmg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160D12.T7 (MSMg01no160_d12.b1)MSMg01-160D12.TJ (MSMg01no160_d12.g1)
ACCAG359949AG359950
length723782
length of high quality
(start - end)
310 (50 - 359)205 (79 - 283)
definitionCHROMAT_FILE: MSMg01no160_d12.b1 PHD_FILE: MSMg01no160_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:07 2005CHROMAT_FILE: MSMg01no160_d12.g1 PHD_FILE: MSMg01no160_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGTGGTCAGGCTTGGCAGCAAGTGTCTTTACCTGCTGAGT
CTTTCCACGTTTTCTCATTTTTAAAAAGCCATTTATTTTTATTTGTGTGT
GTGAGTATAGTATATGTATCCATGTCCTTGTCCGTGTCCGTGTGTGTCCA
TGTCTGTGTGTGTCCGTGTCAGAAAACTCAGAAATCTGCCTGCCTCTGCC
TCCCATGTGCTGGGATTAAAGGTGTGCGCCACCCCTACCCAGCTCCTAGC
CCAGCTTTTTAAAAAGTGAATCTTGCATGTTGGGCATCATGCTAGACACA
CGGAAATTTTGTTTTTTTGCCCCCCCCCCCCTGAGGGGGACAAGGTGGGA
CACACCTGTGATCTCCACATTCAAAAATCAAAGGTAGGAAGTCGGAAAAG
TCAAGGCTGGCCTGCAGTATGTACTGAGCTGAGTTCACCCGGGACTGGAG
AGAGAGACCTTGTCTGTAAACACCAAAAGCCAACCAGAGCAGGATTGGGC
TGGAGAGATGGCTCAGGAGTTAAATGAGGGTCAGTAACCCAGACCAGGAC
GCTTGGGGAGGCTTTTATGAGGAAGAATACGTTTGAAATGGAGCATGGTG
GTTCATACCTTTAATCCTAGCACTCCAGAGGTAGAGGCAGGAGGATCTCT
GTGAGTTCCAGGGCAGCCAGAGT
TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCTGACTCTGCCTCAGCC
TACCCAATGTTGGAATTATAAGTTTATGCCACCATACCCAACCCTCTTGC
TTTCATAAAAGAGTCTAAGTCTTTGTCCTGACTTTAAACTGTACCAGAAA
GCTATAAGCCATTAAGTATGAACTTATATACACTTGTAAAAGCCAAGGTT
TTTTAAAAAGCAAAAAACAAGCCGGGCGTGGTGGCGCTCGGTTTTAACCC
CAGCACTTGGGAGGCCGAGCCTTTTTTTATCTCTGATTTCGAGGCCCAAC
AGAACAAATTTTAGAGTGCCTCGAAAAGCAAGGGCCAAAATGATAAATAT
TGTTATGTGTTGTTTTTTCCTCCCCCATAAAAAAAAAAAAAAAAAATGTG
TGTGGGGGGGGGTTGCTTTTCACTTACTCTTCTAATTCATTAACCTTTAA
CTTTATAATAACATGCGAAATTTCTATGAAAATTTATTAAAAATATATTA
TATAATCTATTTTCCTTACTTCTTTCCTTTCATCCGCTATCTTAATATTT
CATTTTATTTTATAATTACATACATTAACAATCATTTACCCGTATTATTT
TATACATCTAAATTCTTATTTTTTAATATTTATTCTTTCCTAATTTATTT
ATATATTTTTTAAATACACAACAAATTATTTATATTATATTAACTGAAAT
TACTTCTTATTTTATATTGTTATTATCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_d12.g1 MSMg01no160_d12.g1 CHROMAT_FILE:
MSMg01no160_d12.g1 PHD_FILE: MSMg01no160_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:07 2005
         (205 letters)



>mm_chr11_79306204_79306808
          Length = 605

 Score =  397 bits (205), Expect = e-115
 Identities = 205/205 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttctgactctgcctcagcctacccaatgttggaattataagtttatgccaccatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 attttctgactctgcctcagcctacccaatgttggaattataagtttatgccaccatacc 410

                                                                       
Query: 61  caaccctcttgctttcataaaagagtctaagtctttgtcctgactttaaactgtaccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caaccctcttgctttcataaaagagtctaagtctttgtcctgactttaaactgtaccaga 350

                                                                       
Query: 121 aagctataagccattaagtatgaacttatatacacttgtaaaagccaaggttttttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagctataagccattaagtatgaacttatatacacttgtaaaagccaaggttttttaaaa 290

                                    
Query: 181 agcaaaaaacaagccgggcgtggtg 205
           |||||||||||||||||||||||||
Sbjct: 289 agcaaaaaacaagccgggcgtggtg 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)