BAC Information

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BAC

Clone NameMSMg01-160E11
Chromosome11 (Build37)
Map Location 86,642,027 - 86,642,334
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
Downstream geneYpel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160E11.T7 (MSMg01no160_e11.b1)MSMg01-160E11.TJ (MSMg01no160_e11.g1)
ACCAG359993AG359994
length787798
length of high quality
(start - end)
324 (12 - 335)40 (95 - 134)
definitionCHROMAT_FILE: MSMg01no160_e11.b1 PHD_FILE: MSMg01no160_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:11 2005CHROMAT_FILE: MSMg01no160_e11.g1 PHD_FILE: MSMg01no160_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGGGAGAGGATCCGCGGAATTCAAGTATGTGTTTCCAGGGG
CAAGTCATCTTAACACGCTGTGGGGGTAGGCTGCATCCTGTAACCAGCCA
GAGCGAAGTAGGTTTTTATCACTGGGCACTTAAAAGAATGCCACAATAAG
AATGCTTAACTGATGTTAACACATCCGGCTTTTGGGCTGTGATGTTCAAA
GCCACTCACGTTAGATCCTTTGCAGTGATTTTTACTTTGTCCAGAAGCTT
TGAAGGTCCTTTTGTATCTGGCATTGTGAAGCTCCTAAAACAGGTGACTT
TGTTATCTTTATTCCAAATTCTGAGTGCCTTTCTTTTTTGTAAACCACCC
CCCCGCAGTCATACTGGGTTTCTTTGTTGTTGTTATTGCCCCCCCCTATG
AAAAGAATAAAATTGTTCTTCCGCTTTTCCCTTGTTCATCCCTTCTTGTT
TTCCCTTTGCCCTTGACATACCCCACCCCACAGTAATACTTTATTCATAT
ATTACATAATTATATTATCGCCCCACCATTACCTTCCAACCTAACATTCT
ATTAATTCCATCACAACACTCCCATAATACCCTTTAATCCACACACAACA
ATCACCTCAACTCCTTTTTTTCCTCCCACCCCCACCACTTCTCTTTCAGC
ACCCCCCCCTACCTACTTCAATAATTCTTTTCACAACATCCACCTTTATT
TTATCATCTCACTATATCAACTCATTTTACTAAATCCTATCCCATCATAT
ATCTCCCATCACATCCCTGTCTCGCTTTCACATTTCC
CGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXANTGTTTGTGNATTCAGGNCATAAC
CANAAACCTCTGCTTTTTTTAGGCTTCCTACATAANANCGNNGANAAAAG
AAATAATTCTACTCCAGNNAAATGCATAATTGAAAGNCTGCCTGCGTGCT
TAAAAAAACACACCGCGTGGCCTCTCTAAAGCAAAAAGNCCGCCCGAGCC
ATTGCTTTCCTTTCTCNANCTGCTGTTTGTGTAAAACCTGNCNTCNNNGC
TGCTCATCCTGNCCACTGTTCTTCCCCCNTTGNNNCCTTACNATCNGNNN
TANATTTCNTTTTCTTCCCCCTNNTCTNNCCCTTCNNCCCNNNTTCTTTT
TTTTTGGGGGTGGTGGTCGCCCCCCCCCCCCAAAAAAAATTTCCTTCNCC
CCCCNCCNNCCCCCCCCCCCCCTCCCCCCCCNTTTTCTCTCCCCCCCCTT
CCTCCCCCCCCCCCCTCCTTCGGGCTCCCACTCCCCCCCCCTTTCTTCCC
CTCTTTCTTCCTTCCCCCTTTTCCCTCCCTCCCCCCCTCCCCCCCCCCCC
TTTCTTTTTTTCCTTCTCCTCCCCTTCCTCCNCCTTTTTTCTTTTCNCCC
CCTTCCTTCTCTTTCCCTTCCCCCCCCCCCCCCCCCCTTCCCTCCTTCCN
NTTTTCCTTCTTCTTTATGGTGGAGCGGGAAGATCCCTTTTTTTTTTCCT
CCCCTCCCCTCCCCTCCCTCCTTCTCGTTTTATTATGATGAATGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_e11.b1 MSMg01no160_e11.b1 CHROMAT_FILE:
MSMg01no160_e11.b1 PHD_FILE: MSMg01no160_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:11 2005
         (324 letters)



>mm_chr11_86641813_86642536
          Length = 724

 Score =  534 bits (276), Expect = e-156
 Identities = 300/308 (97%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattcaagtatgtgtttccaggggcaagtcatcttaacacgctgtgggggtaggctgca 74
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 215 gaattcaagtatgtgtttccaggggcaagtcatcttaacacactgtgggggtaggctgca 274

                                                                       
Query: 75  tcctgtaaccagccagagcgaagtaggtttttatcactgggcacttaaaagaatgccaca 134
           |||||||||| | ||||| ||||||||||||||||||  |||||||||||||||||||||
Sbjct: 275 tcctgtaacccggcagagtgaagtaggtttttatcaccaggcacttaaaagaatgccaca 334

                                                                       
Query: 135 ataagaatgcttaactgatgttaacacatccggcttttgggctgtgatgttcaaagccac 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ataagaatgcttaactgatgttaacacatccggcttttgggctgtgatgttcaaagccac 394

                                                                       
Query: 195 tcacgttagatcctttgcagtgatttttactttgtccagaagctttgaaggtccttttgt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcacgttagatcctttgcagtgatttttactttgtccagaagctttgaaggtccttttgt 454

                                                                       
Query: 255 atctggcattgtgaagctcctaaaacaggtgactttgttatctttattccaaattctgag 314
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 455 gtctggcattgtgaagctcctaaaacaggggactttgttatctttattccaaattctgag 514

                   
Query: 315 tgcctttc 322
           ||||||||
Sbjct: 515 tgcctttc 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)